Darren A. Natale

Orcid: 0000-0001-5809-9523

According to our database1, Darren A. Natale authored at least 42 papers between 2000 and 2023.

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Bibliography

2023
InterPro in 2022.
Nucleic Acids Res., January, 2023

Annotation of biologically relevant ligands in UniProtKB using ChEBI.
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Bioinform., January, 2023

2022
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant., 2022

A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022

2021
The Gene Ontology resource: enriching a GOld mine.
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Nucleic Acids Res., 2021

The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res., 2021

UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
Bioinform., 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Database J. Biol. Databases Curation, 2021

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.
Briefings Bioinform., 2021

Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020
GlyGen data model and processing workflow.
Bioinform., 2020

2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019

PIRSitePredict for protein functional site prediction using position-specific rules.
Database J. Biol. Databases Curation, 2019

2017
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Nucleic Acids Res., 2017

InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

2016
The development of non-coding RNA ontology.
Int. J. Data Min. Bioinform., 2016

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
J. Biomed. Semant., 2016

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
J. Biomed. Semant., 2016

Computational clustering for viral reference proteomes.
Bioinform., 2016

Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A domain ontology for the Non-Coding RNA field.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Protein Ontology: a controlled structured network of protein entities.
Nucleic Acids Res., 2014

Knowledge Representation of Protein PTMs and Complexes in the Protein Ontology: Application to Multi-Faceted Disease Analysis.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2012
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res., 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012

2011
The Protein Ontology: a structured representation of protein forms and complexes.
Nucleic Acids Res., 2011

The Representation of Protein Complexes in the Protein Ontology (PRO).
BMC Bioinform., 2011

Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009
InterPro: the integrative protein signature database.
Nucleic Acids Res., 2009

TGF-beta signaling proteins and the Protein Ontology.
BMC Bioinform., 2009

2007
Framework for a Protein Ontology.
BMC Bioinform., 2007

2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006

2005
The Universal Protein Resource (UniProt).
Nucleic Acids Res., 2005

Computational identification of strain-, species- and genus-specific proteins.
BMC Bioinform., 2005

2004
PIRSF: family classification system at the Protein Information Resource.
Nucleic Acids Res., 2004

UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res., 2004

2003
The COG database: an updated version includes eukaryotes.
BMC Bioinform., 2003

2001
The COG database: new developments in phylogenetic classification of proteins from complete genomes.
Nucleic Acids Res., 2001

2000
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Nucleic Acids Res., 2000


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