Chuming Chen

Orcid: 0000-0002-7287-9013

According to our database1, Chuming Chen authored at least 25 papers between 2004 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2023
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
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Bioinform., January, 2023

2022
A knowledge graph representation learning approach to predict novel kinase-substrate interactions.
CoRR, 2022

2021
UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

Understanding the factors driving the opioid epidemic using machine learning.
CoRR, 2021

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
Bioinform., 2021

COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.
Bioinform., 2021

Understanding the factors related to the opioid epidemic using machine learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Nucleic Acids Res., 2020

2019
PIRSitePredict for protein functional site prediction using position-specific rules.
Database J. Biol. Databases Curation, 2019

2018
RESTful API for iPTMnet: An Integrated Resource for Protein Post-translational Modification Network Discovery.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Nucleic Acids Res., 2017

2016
Computational clustering for viral reference proteomes.
Bioinform., 2016

2014
Software for pre-processing Illumina next-generation sequencing short read sequences.
Source Code Biol. Medicine, 2014

2013
A fast Peptide Match service for UniProt Knowledgebase.
Bioinform., 2013

ngsShoRT: A Software for Pre-processing Illumina Short Read Sequences for De Novo Genome Assembly.
Proceedings of the ACM Conference on Bioinformatics, 2013

An Integrated Approach for Interpretation of Clinical NGS Genomic Variant Data.
Proceedings of the AMIA 2013, 2013

2012
Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees.
Database J. Biol. Databases Curation, 2012

2010
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.
Adv. Bioinformatics, 2010

2008
Metrics for Evaluating the Semantic Implications of Changes in Evolving Ontologies.
Proceedings of the 2008 International Conference on Semantic Web & Web Services, 2008

A New Approach to Managing the Evolution of OWL Ontologies.
Proceedings of the 2008 International Conference on Semantic Web & Web Services, 2008

2007
Extending Description Logic for Reasoning about Ontology Evolution.
Proceedings of the 2007 IEEE / WIC / ACM International Conference on Web Intelligence, 2007

2005
AGML Central: web based gel proteomic infrastructure.
Bioinform., 2005

A Dual Authentication Protocol for IEEE 802.11 Wireless LANs.
Proceedings of the 2nd IEEE International Symposium on Wireless Communication Systems, 2005

2004
A Web Interface for Nessus Network Security Scanner.
Proceedings of the International Conference on Internet Computing, 2004


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