Tandy J. Warnow
Orcid: 0000-0001-7717-3514Affiliations:
- University of Illinois at Urbana-Champaign, Department of Computer Science, IL, USA
- University of Texas at Austin, Department of Computer Science, TX, USA
According to our database1,
Tandy J. Warnow
authored at least 168 papers
between 1990 and 2024.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2015, "For contributions to mathematical theory, algorithms, and software for large-scale molecular phylogenetics and historical linguistics.".
Timeline
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Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
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on dl.acm.org
On csauthors.net:
Bibliography
2024
J. Open Source Softw., February, 2024
Statistically Consistent Estimation of Rooted and Unrooted Level-1 Phylogenetic Networks from SNP Data.
Proceedings of the Comparative Genomics - 21st International Conference, 2024
2023
EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment.
Algorithms Mol. Biol., December, 2023
Algorithms Mol. Biol., December, 2023
QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent.
J. Comput. Biol., November, 2023
Bioinform., January, 2023
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract).
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract).
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023
Statistically Consistent Rooting of Species Trees Under the Multispecies Coalescent Model.
Proceedings of the Research in Computational Molecular Biology, 2023
Proceedings of the Complex Networks & Their Applications XII, 2023
2022
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling.
J. Comput. Biol., 2022
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment.
J. Comput. Biol., 2022
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.
Bioinform., 2022
Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022
2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Quant. Sci. Stud., 2021
Algorithms Mol. Biol., 2021
Algorithms, 2021
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021
Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021
2020
Scientometrics, 2020
Quant. Sci. Stud., 2020
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.
Bioinform., 2020
Algorithms Mol. Biol., 2020
Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020
Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.
Proceedings of the Research in Computational Molecular Biology, 2020
2019
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows.
Bioinform., 2019
TreeMerge: a new method for improving the scalability of species tree estimation methods.
Bioinform., 2019
Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy.
Algorithms Mol. Biol., 2019
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge.
Algorithms Mol. Biol., 2019
Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019
Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019
Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019
2018
The development and application of bioinformatics core competencies to improve bioinformatics training and education.
PLoS Comput. Biol., 2018
Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods.
CoRR, 2018
Algorithms Mol. Biol., 2018
Algorithms Mol. Biol., 2018
New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy.
Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018
NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees.
Proceedings of the Comparative Genomics - 16th International Conference, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization.
Bioinform., 2017
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017
Proceedings of the Comparative Genomics - 15th International Workshop, 2017
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).
PLoS Comput. Biol., 2016
An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees.
BMC Bioinform., 2016
2015
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.
J. Comput. Biol., 2015
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes.
Bioinform., 2015
Proceedings of the Research in Computational Molecular Biology, 2015
2014
Proceedings of the Research in Computational Molecular Biology, 2014
2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Proceedings of the Models and Algorithms for Genome Evolution, 2013
2012
J. Comput. Biol., 2012
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles.
J. Comput. Biol., 2011
Algorithms Mol. Biol., 2011
Proceedings of the Research in Computational Molecular Biology, 2011
2010
Algorithms Mol. Biol., 2010
2009
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
2008
J. Comput. Biol., 2008
The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis.
Proceedings of the Biocomputing 2008, 2008
2007
Distance-based genome rearrangement phylogeny.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007
Reconstructing phylogenies from gene-content and gene-order data.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007
2006
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
2005
J. Comput. Biol., 2005
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005
2004
IEEE ACM Trans. Comput. Biol. Bioinform., 2004
IEEE ACM Trans. Comput. Biol. Bioinform., 2004
Proceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2004
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
2003
Comput. Humanit., 2003
Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining.
J. Algorithms, 2003
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003
Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
2002
J. Supercomput., 2002
J. Comput. Syst. Sci., 2002
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002
Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
Statistically based postprocessing of phylogenetic analysis by clustering.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
Proceedings of the Approximation Algorithms for Combinatorial Optimization, 2002
2001
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001
Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time.
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001
Proceedings of the Proceedings on 33rd Annual ACM Symposium on Theory of Computing, 2001
Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001
Designing fast converging phylogenetic methods.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
New approaches for reconstructing phylogenies from gene order data.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
2000
The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs.
Theor. Comput. Sci., 2000
A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
Proceedings of the Experimental Algorithmics, 2000
1999
SIAM J. Comput., 1999
J. Comput. Biol., 1999
Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology.
Algorithmica, 1999
Proceedings of the Algorithm Engineering, 1999
Obtaining highly accurate topology estimates of evolutionary trees from very short sequences.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999
1998
1997
SIAM J. Comput., 1997
Local Quartet Splits of a Binary Tree Infer All Quartet Splits Via One Dyadic Inference Rule.
Comput. Artif. Intell., 1997
Proceedings of the Automata, Languages and Programming, 24th International Colloquium, 1997
Proceedings of the Computing and Combinatorics, Third Annual International Conference, 1997
1996
Discret. Appl. Math., 1996
Discret. Appl. Math., 1996
Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms, 1996
Inferring evolutionary trees from polymorphic characters, and an analysis of the Indo-European family of languages.
Proceedings of the Mathematical Hierarchies and Biology, 1996
1995
J. Comput. Biol., 1995
Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995
A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies when the Number of Character States is Fixed.
Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995
Proceedings of the Combinatorial Pattern Matching, 6th Annual Symposium, 1995
1994
1993
Inf. Process. Lett., 1993
Proceedings of the Fourth Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1993
1992
Proceedings of the Automata, Languages and Programming, 19th International Colloquium, 1992
1991
Proceedings of the Second Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1991
1990
Proceedings of the First Annual ACM-SIAM Symposium on Discrete Algorithms, 1990
Proceedings of the 31st Annual Symposium on Foundations of Computer Science, 1990