Jijun Tang

Orcid: 0000-0002-6377-536X

According to our database1, Jijun Tang authored at least 153 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2024
Drug-Drug Interaction Relation Extraction Based on Deep Learning: A Review.
ACM Comput. Surv., June, 2024

Prediction of LncRNA-Protein Interactions Based on Kernel Combinations and Graph Convolutional Networks.
IEEE J. Biomed. Health Informatics, April, 2024

TranSiam: Aggregating multi-modal visual features with locality for medical image segmentation.
Expert Syst. Appl., March, 2024

Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification.
CoRR, 2024

Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification.
Proceedings of the 6th International Conference on Image Processing and Machine Vision, 2024

2023
ComDock: A novel approach for protein-protein docking with an efficient fusing strategy.
Comput. Biol. Medicine, December, 2023

Identification of DNA N4-methylcytosine Sites via Multiview Kernel Sparse Representation Model.
IEEE Trans. Artif. Intell., October, 2023

Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.
Briefings Bioinform., July, 2023

IK-DDI: a novel framework based on instance position embedding and key external text for DDI extraction.
Briefings Bioinform., May, 2023

CoMutDB: the landscape of somatic mutation co-occurrence in cancers.
Bioinform., January, 2023

Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Boosting Short Text Classification by Solving the OOV Problem.
IEEE ACM Trans. Audio Speech Lang. Process., 2023

A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization.
Expert Syst. Appl., 2023

DETA-Net: A Dual Encoder Network with Text-Guided Attention Mechanism for Skin-Lesions Segmentation.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

Prediction of LncRNA-Protein Interactions Based on Multi-kernel Fusion and Graph Auto-Encoders.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

MixUNet: Mix the 2D and 3D Models for Robust Medical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

BTCN: Bridging the Gap Between Pre-trained and Downstream Models for Endoscopic Caries Detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Res2Unet: A multi-scale channel attention network for retinal vessel segmentation.
Neural Comput. Appl., 2022

Inferring human microbe-drug associations via multiple kernel fusion on graph neural network.
Knowl. Based Syst., 2022

A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases.
Neurocomputing, 2022

EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation.
CoRR, 2022

TranSiam: Fusing Multimodal Visual Features Using Transformer for Medical Image Segmentation.
CoRR, 2022

BAT-Net: An enhanced RNA Secondary Structure prediction via bidirectional GRU-based network with attention mechanism.
Comput. Biol. Chem., 2022

Inferring gene regulatory network via fusing gene expression image and RNA-seq data.
Bioinform., 2022

A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data.
Briefings Bioinform., 2022

Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes.
Briefings Bioinform., 2022

Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization.
Briefings Bioinform., 2022

Identification of DNA N4-methylcytosine sites via fuzzy model on self representation.
Appl. Soft Comput., 2022

Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model.
Appl. Intell., 2022

Multi-scale Neighborhood Attention Transformer on U-Net for Medical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

BP-DDI: Drug-drug interaction prediction based on biological information and pharmacological text.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Multi-Scale Time-Series Kernel-Based Learning Method for Brain Disease Diagnosis.
IEEE J. Biomed. Health Informatics, 2021

AIEpred: An Ensemble Predictive Model of Classifier Chain to Identify Anti-Inflammatory Peptides.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

CrystalM: A Multi-View Fusion Approach for Protein Crystallization Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information.
Neural Comput. Appl., 2021

Identification of drug-target interactions via multi-view graph regularized link propagation model.
Neurocomputing, 2021

A sequence-based multiple kernel model for identifying DNA-binding proteins.
BMC Bioinform., 2021

Predicting subcellular location of protein with evolution information and sequence-based deep learning.
BMC Bioinform., 2021

A comprehensive overview and critical evaluation of gene regulatory network inference technologies.
Briefings Bioinform., 2021

Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset.
Briefings Bioinform., 2021

Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment.
Briefings Bioinform., 2021

DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences.
Briefings Bioinform., 2021

Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution.
Briefings Bioinform., 2021

MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction.
Briefings Bioinform., 2021

Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares.
Appl. Soft Comput., 2021

IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis.
IEEE Access, 2021

A Zero-Shot Method for 3D Medical Image Segmentation.
Proceedings of the 2021 IEEE International Conference on Multimedia and Expo, 2021

RCGA-Net: An Improved Multi-hybrid Attention Mechanism Network in Biomedical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Multi-AMP: detecting the antimicrobial peptides and their activities using the multi-task learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

GEU-Net: Rethinking the information transmission in the skip connection of U-Net architecture.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

MIASNet: A medical image segmentation method predicting future based on past and current cases.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Document-level DDI relation extraction with document-entity embedding.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides.
IEEE J. Biomed. Health Informatics, 2020

Identification of drug-target interactions via fuzzy bipartite local model.
Neural Comput. Appl., 2020

Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion.
Knowl. Based Syst., 2020

Identification of Highest-Affinity Binding Sites of Yeast Transcription Factor Families.
J. Chem. Inf. Model., 2020

Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion.
Neurocomputing, 2020

Identification of human microRNA-disease association via hypergraph embedded bipartite local model.
Comput. Biol. Chem., 2020

Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm.
BMC Bioinform., 2020

Critical evaluation of web-based prediction tools for human protein subcellular localization.
Briefings Bioinform., 2020

Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation.
Appl. Soft Comput., 2020

A Deep Supervision CNN Network for Brain Tumor Segmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020

An two-layer predictive model of ensemble classifier chain for detecting antimicrobial peptides.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Melanoma Classification in Dermoscopy Images via Ensemble Learning on Deep Neural Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Identification of Drug-Side Effect Association via Semisupervised Model and Multiple Kernel Learning.
IEEE J. Biomed. Health Informatics, 2019

Phylogenetic Reconstruction for Copy-Number Evolution Problems.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Identification of drug-side effect association via multiple information integration with centered kernel alignment.
Neurocomputing, 2019

Identifying protein-protein interface via a novel multi-scale local sequence and structural representation.
BMC Bioinform., 2019

LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information.
IEEE Access, 2019

The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

Identification of DNA-Binding Proteins via Fuzzy Multiple Kernel Model and Sequence Information.
Proceedings of the Intelligent Computing Theories and Application, 2019

2018
Guest Editorial for the 14<sup>th</sup> Asia Pacific Bioinformatics Conference.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Prediction of human protein subcellular localization using deep learning.
J. Parallel Distributed Comput., 2018

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting.
J. Comput. Biol., 2018

A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm.
Int. J. Comput. Biol. Drug Des., 2018

A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis.
Comput. Hum. Behav., 2018

Detecting complexes from edge-weighted PPI networks via genes expression analysis.
BMC Syst. Biol., 2018

2017
Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier.
J. Chem. Inf. Model., December, 2017

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information.
Inf. Sci., 2017

Identification of drug-target interactions via multiple information integration.
Inf. Sci., 2017

Improvement of phylogenetic method to analyze compositional heterogeneity.
BMC Syst. Biol., 2017

A Median Solver and Phylogenetic Inference Based on DCJ Sorting.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

HiCComp: Multiple-level comparative analysis of Hi-C data by triplet network.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Down syndrome prediction/screening model based on deep learning and illumina genotyping array.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Exemplar or matching: modeling DCJ problems with unequal content genome data.
J. Comb. Optim., 2016

Learning from real imbalanced data of 14-3-3 proteins binding specificity.
Neurocomputing, 2016

Guest Editorial for the 14th Asia Pacific Bioinformatics Conference (APBC2016).
Comput. Biol. Chem., 2016

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy.
BMC Syst. Biol., 2016

Predicting protein-protein interactions via multivariate mutual information of protein sequences.
BMC Bioinform., 2016

Analysis of gene copy number changes in tumor phylogenetics.
Algorithms Mol. Biol., 2016

2015
A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface.
J. Chem. Inf. Model., 2015

Maximum Parsimony Analysis of Gene Copy Number Changes.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

Ancestral reconstruction under weighted maximum matching.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014

MLGO: phylogeny reconstruction and ancestral inference from gene-order data.
BMC Bioinform., 2014

GSO: A Semantic Web Ontology to Capture 3D Genome Structure.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents.
Proceedings of the Computing and Combinatorics - 20th International Conference, 2014

Assessing ancestral genome reconstruction methods by resampling.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes.
Proceedings of the International Conference on Computational Science, 2013

Exploring genomes with a game engine.
Proceedings of the 8th International Conference on the Foundations of Digital Games, 2013

Exploring genomes with a game engine.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?
Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012
Label-Guided Graph Exploration with Adjustable Ratio of Labels.
Int. J. Found. Comput. Sci., 2012

Label-Guided Graph Exploration with Adjustable Ratio of Labels
CoRR, 2012

A mixture framework for inferring ancestral gene orders.
BMC Genom., 2012

2011
Multi-pattern Matching with Wildcards.
J. Softw., 2011

A different approach to teaching Chinese through serious games.
Proceedings of the Foundations of Digital Games, 2011

Isolating - a new resampling method for gene order data.
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011

Maximum likelihood phylogenetic reconstruction using gene order encodings.
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011

Emulating Insertion and Deletion Events in Genome Rearrangement Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Lost in the Middle Kingdom: a second language acquisition video game.
Proceedings of the 49th Annual Southeast Regional Conference, 2011

2010
Using jackknife to assess the quality of gene order phylogenies.
BMC Bioinform., 2010

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.
BMC Bioinform., 2010

Matching a Set of Patterns with Wildcards.
Proceedings of the Third International Symposium on Parallel Architectures, 2010

Phylogenetic reconstruction with gene rearrangements and gene losses.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
A space-efficient algorithm for three sequence alignment and ancestor inference.
Int. J. Data Min. Bioinform., 2009

Simultaneous phylogeny reconstruction and multiple sequence alignment.
BMC Bioinform., 2009

Maximum independent sets of commuting and noninterfering inversions.
BMC Bioinform., 2009

An Exact Solver for the DCJ Median Problem.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008
Improving Reversal Median Computation Using Commuting Reversals and Cycle Information.
J. Comput. Biol., 2008

A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

A New Approach for Tree Alignment Based on Local Re-Optimization.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

Phylogenetic reconstruction with disk-covering and Bayesian approaches.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data.
Proceedings of the Experimental Algorithms, 6th International Workshop, 2007

Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.
Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007

A Fast 3D Correspondence Method for Statistical Shape Modeling.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

Three Sequence Alignment and Ancestor Inference with Affine Gap Costs.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

A Heuristic for Phylogenetic Reconstruction Using Transposition.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Reconstructing phylogenies from gene-content and gene-order data.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007

2006
Succinct Text Indexes on Large Alphabet.
Proceedings of the Theory and Applications of Models of Computation, 2006

Inferring Ancestral Chloroplast Genomes with Inverted Repea.
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

2005
Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements.
Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005

Quartet-Based Phylogeny Reconstruction from Gene Orders.
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
Phylogenetic Reconstruction from Arbitrary Gene-Order Data.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content.
Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003

Scaling up accurate phylogenetic reconstruction from gene-order data.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002
Steps toward accurate reconstructions of phylogenies from gene-order data.
J. Comput. Syst. Sci., 2002

Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002


  Loading...