Søren Brunak
Orcid: 0000-0003-0316-5866
According to our database1,
Søren Brunak
authored at least 95 papers
between 1989 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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Bibliography
2024
Seasonally adjusted laboratory reference intervals to improve the performance of machine learning models for classification of cardiovascular diseases.
BMC Medical Informatics Decis. Mak., December, 2024
2023
Population-wide analysis of hospital laboratory tests to assess seasonal variation and temporal reference interval modification.
Patterns, August, 2023
Frontiers Bioinform., May, 2023
BALDR: A Web-based platform for informed comparison and prioritization of biomarker candidates for type 2 diabetes mellitus.
PLoS Comput. Biol., 2023
2022
Discrete-time survival analysis in the critically ill: a deep learning approach using heterogeneous data.
npj Digit. Medicine, 2022
npj Digit. Medicine, 2022
2021
Time-ordered comorbidity correlations identify patients at risk of mis- and overdiagnosis.
npj Digit. Medicine, 2021
npj Digit. Medicine, 2021
2020
PLoS Comput. Biol., 2020
Implementation and comparison of two text mining methods with a standard pharmacovigilance method for signal detection of medication errors.
BMC Medical Informatics Decis. Mak., 2020
Towards standardization guidelines for in silico approaches in personalized medicine.
J. Integr. Bioinform., 2020
Using National Electronic Health Care Registries to Analyse and Predict Alcoholic Liver Disease.
Proceedings of the Extraction et Gestion des Connaissances, 2020
2019
Incorporating symptom data in longitudinal disease trajectories for more detailed patient stratification.
Int. J. Medical Informatics, 2019
A generic deep convolutional neural network framework for prediction of receptor-ligand interactions - NetPhosPan: application to kinase phosphorylation prediction.
Bioinform., 2019
Bioinform., 2019
2018
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
PLoS Comput. Biol., 2018
Nucleic Acids Res., 2018
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.
BMC Bioinform., 2018
2017
Sequencing and <i>de novo</i> assembly of 150 genomes from Denmark as a population reference.
Nat., 2017
Nucleic Acids Res., 2017
Temporal Order of Disease Pairs Affects Subsequent Disease Trajectories: The Case of Diabetes and Sleep Apnea.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017
2016
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res., 2016
Database J. Biol. Databases Curation, 2016
2015
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Nat., 2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Finding Cervical Cancer Symptoms in Swedish Clinical Text using a Machine Learning Approach and NegEx.
Proceedings of the AMIA 2015, 2015
2014
J. Biomed. Informatics, 2014
Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics.
Briefings Bioinform., 2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
Negation scope and spelling variation for text-mining of Danish electronic patient records.
Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014
2013
Nucleic Acids Res., 2013
Nucleic Acids Res., 2013
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text.
J. Am. Medical Informatics Assoc., 2013
Question Answering for Health Professionals and Laypersons.
Proceedings of the MEDINFO 2013, 2013
2011
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts.
PLoS Comput. Biol., 2011
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response.
BMC Bioinform., 2011
The strength of intron donor splice sites in human genes displays a bell-shaped pattern.
Bioinform., 2011
2010
Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks.
PLoS Comput. Biol., 2010
Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.
Nucleic Acids Res., 2010
2009
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings Bioinform., 2009
2008
Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments.
Nucleic Acids Res., 2008
2007
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
J. Chem. Inf. Model., 2006
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
Comparison of computational methods for the identification of cell cycle-regulated genes.
Bioinform., 2005
Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates.
Bioinform., 2005
Immunological bioinformatics.
Computational molecular biology, AAAI Press, ISBN: 978-0-262-12280-1, 2005
2004
Coronavirus 3CL<sup><i>pro </i></sup>proteinase cleavage sites: Possible relevance to SARS virus pathology.
BMC Bioinform., 2004
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
Bioinform., 2004
AI Mag., 2004
Proceedings of the Artificial Immune Systems, Third International Conference, 2004
2003
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach.
Neural Comput., 2003
Bioinform., 2003
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks.
Proceedings of the Mathematical Methods for Protein Structure Analysis and Design, 2003
2002
Prediction of Glycosylation Across the Human Proteome and the Correlation to Protein Function.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
2001
Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks.
Comput. Chem., 2001
Proceedings of the Sequence Learning - Paradigms, Algorithms, and Applications, 2001
Bioethics, Fiction Science, and the Future of Mankind - Session Introduction.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001
ISMB 2001.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
Bioinformatics - the machine learning approach (2. ed.).
MIT Press, ISBN: 978-0-262-02506-5, 2001
2000
J. Chem. Inf. Comput. Sci., 2000
Bioinform., 2000
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
Proceedings of the Artificial Neural Networks in Medicine and Biology, 2000
Bioinformatics - the machine learning approach.
MIT Press, ISBN: 978-0-262-02442-6, 2000
1999
Nucleic Acids Res., 1999
Nucleic Acids Res., 1999
Bioinform., 1999
Bioinform., 1999
Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999
1998
Nucleic Acids Res., 1998
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
1997
Nucleic Acids Res., 1997
A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites.
Int. J. Neural Syst., 1997
Displaying the information contents of structural RNA alignments: the structure logos.
Comput. Appl. Biosci., 1997
1996
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
1993
Proceedings of the Advances in Neural Information Processing Systems 6, 1993
1990
Proceedings of the Advances in Neural Information Processing Systems 3, 1990
1989