Eleazar Eskin
Affiliations:- University of California, San Diego, USA
According to our database1,
Eleazar Eskin
authored at least 102 papers
between 1999 and 2022.
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on cse.ucsd.edu
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Bibliography
2022
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities.
CoRR, 2022
Briefings Bioinform., 2022
2020
A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies.
J. Comput. Biol., 2020
Proceedings of the Research in Computational Molecular Biology, 2020
Benchmarking of computational error-correction methods for next-generation sequencing data.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2019
J. Comput. Biol., 2019
Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions.
J. Comput. Biol., 2019
2018
Bioinform., 2018
Proceedings of the Research in Computational Molecular Biology, 2018
2017
IPED2: Inheritance Path Based Pedigree Reconstruction Algorithm for Complicated Pedigrees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.
J. Comput. Biol., 2017
Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects.
Bioinform., 2017
Bioinform., 2017
Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes.
Bioinform., 2017
A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference.
Proceedings of the Research in Computational Molecular Biology, 2017
2016
Bioinform., 2016
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016
2015
J. Comput. Biol., 2015
Commun. ACM, 2015
Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure.
Proceedings of the Research in Computational Molecular Biology, 2015
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
J. Bioinform. Comput. Biol., 2014
Bioinform., 2014
Bioinform., 2014
Proceedings of the Research in Computational Molecular Biology, 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
2013
J. Comput. Biol., 2013
J. Comput. Biol., 2013
J. Comput. Biol., 2013
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data.
J. Comput. Biol., 2013
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data.
J. Comput. Biol., 2013
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Bioinform., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
Efficient genotyping of individuals using overlapping pool sequencing and imputation.
Proceedings of the Conference Record of the Forty Sixth Asilomar Conference on Signals, 2012
2011
J. Comput. Biol., 2011
Gene networks associated with conditional fear in mice identified using a systems genetics approach.
BMC Syst. Biol., 2011
BMC Bioinform., 2011
BMC Bioinform., 2011
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.
Bioinform., 2011
Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity.
Bioinform., 2011
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011
Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials.
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
NeuroImage, 2010
J. Comput. Biol., 2010
Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples.
J. Comput. Biol., 2010
BMC Bioinform., 2010
Bioinform., 2010
Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms.
Artif. Intell. Medicine, 2010
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010
Respecting Markov Equivalence in Computing Posterior Probabilities of Causal Graphical Features.
Proceedings of the Twenty-Fourth AAAI Conference on Artificial Intelligence, 2010
2009
Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast.
PLoS Comput. Biol., 2009
Proceedings of the Research in Computational Molecular Biology, 2009
2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information.
Proceedings of the Research in Computational Molecular Biology, 2008
2007
J. Bioinform. Comput. Biol., 2007
Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
Bioinform., 2007
Proceedings of the Research in Computational Molecular Biology, 2007
Proceedings of the Research in Computational Molecular Biology, 2007
2006
J. Bioinform. Comput. Biol., 2006
10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB).
Proceedings of the Research in Computational Molecular Biology, 2006
2005
IEEE ACM Trans. Comput. Biol. Bioinform., 2005
J. Comput. Secur., 2005
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005
2004
Bioinform., 2004
Proceedings of the Regulatory Genomics, 2004
From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004
Proceedings of the Biocomputing 2004, 2004
Proceedings of the Advances in Neural Information Processing Systems 17 [Neural Information Processing Systems, 2004
2003
J. Comput. Biol., 2003
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003
2002
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences.
J. Comput. Biol., 2002
Proceedings of the Recent Advances in Intrusion Detection, 5th International Symposium, 2002
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002
Proceedings of the 2002 Workshop on New Security Paradigms, 2002
Proceedings of the Advances in Neural Information Processing Systems 15 [Neural Information Processing Systems, 2002
Finding composite regulatory patterns in DNA sequences.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
Proceedings of the Applications of Data Mining in Computer Security, 2002
Proceedings of the Applications of Data Mining in Computer Security, 2002
2001
SIGMOD Rec., 2001
MEF: Malicious Email Filter - A UNIX Mail Filter That Detects Malicious Windows Executables.
Proceedings of the FREENIX Track: 2001 USENIX Annual Technical Conference, 2001
Proceedings of the 2001 IEEE Symposium on Security and Privacy, 2001
Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
2000
Anomaly Detection over Noisy Data using Learned Probability Distributions.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000
Combining Strategies for Extracting Relations from Text Collections.
Proceedings of the 2000 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery, 2000
Proceedings of the 6th Applied Natural Language Processing Conference, 2000
1999
Genetic programming applied to Othello: introducing students to machine learning research.
Proceedings of the 30th SIGCSE Technical Symposium on Computer Science Education, 1999
Detecting Text Similarity over Short Passages: Exploring Linguistic Feature Combinations via Machine Learning.
Proceedings of the Joint SIGDAT Conference on Empirical Methods in Natural Language Processing and Very Large Corpora, 1999
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999