Alexander Artyomenko

According to our database, Alexander Artyomenko authored at least 11 papers between 2013 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.

Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky

J. Comput. Biol., 2017

Agent-Based in Silico Evolution of HCV Quasispecies.

Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning.

Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums

Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2015

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.

Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov

Bioinform., 2015

2SNV: Quasispecies reconstruction from PacBio reads.

Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky

Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

2014

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.

Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

Deterministic regression algorithm for transcriptome frequency estimation.

Adrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

Reconstruction of influenza a virus variants from PacBio reads.

Alexander Artyomenko, Serghei Mangul, Nicholas C. Wu, Eleazar Eskin, Ren Sun, Alex Zelikovsky

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.

Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky

BMC Bioinform., 2013

Estimation of viral population structure from amplicon-based reads.

Nicholas Mancuso, Alexander Artyomenko, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies.

Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013