Walter Fontana

Orcid: 0000-0003-4062-9957

According to our database1, Walter Fontana authored at least 27 papers between 1994 and 2024.

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Bibliography

2024
Automated Inference of Graph Transformation Rules.
CoRR, 2024

2022
Representing Catalytic Mechanisms with Rule Composition.
J. Chem. Inf. Model., 2022

Probabilistic Inference with Polymerizing Biochemical Circuits.
Entropy, 2022

Characterizing Catalytic Mechanisms with Overlay Graphs.
CoRR, 2022

2021
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry.
J. Comput. Biol., 2021

Graph transformation for enzymatic mechanisms.
Bioinform., 2021

2019
RuleVis: Constructing Patterns and Rules for Rule-Based Models.
Proceedings of the 30th IEEE Visualization Conference, 2019

2018
Dynamic Influence Networks for Rule-Based Models.
IEEE Trans. Vis. Comput. Graph., 2018

Interactions between Causal Structures in Graph Rewriting Systems.
Proceedings of the Proceedings 3rd Workshop on formal reasoning about Causation, 2018

The Kappa platform for rule-based modeling.
Bioinform., 2018

Counterfactual Resimulation for Causal Analysis of Rule-Based Models.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

A Trace Query Language for Rule-Based Models.
Proceedings of the Computational Methods in Systems Biology, 2018

2015
A knowledge representation meta-model for rule-based modelling of signalling networks.
Proceedings of the Eleventh International Workshop on Developments in Computational Models, 2015

2012
Graphs, Rewriting and Pathway Reconstruction for Rule-Based Models.
Proceedings of the IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, 2012

2010
Abstracting the Differential Semantics of Rule-Based Models: Exact and Automated Model Reduction.
Proceedings of the 25th Annual IEEE Symposium on Logic in Computer Science, 2010

2009
Rule-Based Modelling and Model Perturbation.
Trans. Comp. Sys. Biology, 2009

Internal coarse-graining of molecular systems.
Proc. Natl. Acad. Sci. USA, 2009

2008
Sizing Up Allometric Scaling Theory.
PLoS Comput. Biol., 2008

Abstract Interpretation of Cellular Signalling Networks.
Proceedings of the Verification, 2008

Systems biology, models, and concurrency.
Proceedings of the 35th ACM SIGPLAN-SIGACT Symposium on Principles of Programming Languages, 2008

Investigation of a Biological Repair Scheme.
Proceedings of the Membrane Computing - 9th International Workshop, 2008

Rule-Based Modelling, Symmetries, Refinements.
Proceedings of the Formal Methods in Systems Biology, First International Workshop, 2008

2007
Rule-Based Modelling of Cellular Signalling.
Proceedings of the CONCUR 2007 - Concurrency Theory, 18th International Conference, 2007

Scalable Simulation of Cellular Signaling Networks.
Proceedings of the Programming Languages and Systems, 5th Asian Symposium, 2007

2005
Logic and Systems Biology.
Proceedings of the 20th IEEE Symposium on Logic in Computer Science (LICS 2005), 2005

1999
Complexity.
Complex., 1999

1994
Beyond Digital Naturalism.
Artif. Life, 1994


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