Timothy J. Close

According to our database, Timothy J. Close authored at least 17 papers between 2004 and 2015.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2015

<i>De novo</i> meta-assembly of ultra-deep sequencing data.

Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi

Bioinform., 2015

When less is more: 'slicing' sequencing data improves read decoding accuracy and <i>de novo</i> assembly quality.

Stefano Lonardi, Seyed Hamid Mirebrahim, Steve Wanamaker, Matthew Alpert, Gianfranco Ciardo, Denisa Duma, Timothy J. Close

Bioinform., 2015

Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads.

Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi

Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014

CLARK, accurate and efficient classification of DNA sequences.

Rachid Ounit, Timothy J. Close, Steve Wanamaker, Stefano Lonardi

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

De novo assembly of ultra-deep sequencing data.

Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map.

Serdar Bozdag, Timothy J. Close, Stefano Lonardi

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space.

Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close

PLoS Comput. Biol., 2013

Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing.

Denisa Duma, Mary Wootters, Anna C. Gilbert, Hung Q. Ngo, Atri Rudra, Matthew Alpert, Timothy J. Close, Gianfranco Ciardo, Stefano Lonardi

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

2011

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming.

Yonghui Wu, Timothy J. Close, Stefano Lonardi

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space

Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close

CoRR, 2011

2009

A compartmentalized approach to the assembly of physical maps.

Serdar Bozdag, Timothy J. Close, Stefano Lonardi

BMC Bioinform., 2009

2008

Deconvoluting BAC-Gene Relationships Using a Physical Map.

Yonghui Wu, Lan Liu, Timothy J. Close, Stefano Lonardi

J. Bioinform. Comput. Biol., 2008

Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming.

Serdar Bozdag, Timothy J. Close, Stefano Lonardi

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007

Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data.

Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2006

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets.

Jie Zheng, Jan T. Svensson, Kavitha Madishetty, Timothy J. Close, Tao Jiang, Stefano Lonardi

BMC Bioinform., 2006

2005

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.

Xinping Cui, Jin Xu, Rehana Asghar, Pascal Condamine, Jan T. Svensson, Steve Wanamaker, Nils Stein, Mikeal Roose, Timothy J. Close

Bioinform., 2005

2004

Efficient selection of unique and popular oligos for large EST databases.

Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi

Bioinform., 2004