Szymon M. Kielbasa

According to our database, Szymon M. Kielbasa authored at least 13 papers between 2000 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

2017

BIOPET: towards Scalable, Maintainable, User-friendly, Robust and Flexible NGS data analysis pipelines.

Peter van't Hof, Szymon M. Kielbasa, Wibowo Arindrarto, Jeroen F. J. Laros, Sander Bollen, Hailiang Mei

Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2010

TransFind - predicting transcriptional regulators for gene sets.

Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen

Nucleic Acids Res., 2010

Targetfinder.org: a resource for systematic discovery of transcription factor target genes.

Szymon M. Kielbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka

Nucleic Acids Res., 2010

2005

HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.

Matthias Truss, Maciej Swat, Szymon M. Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier

Nucleic Acids Res., 2005

Measuring similarities between transcription factor binding sites.

Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel

BMC Bioinform., 2005

2004

SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.

Zhenjun Hu, Yutao Fu, Anason S. Halees, Szymon M. Kielbasa, Zhiping Weng

Nucleic Acids Res., 2004

HOMGL - comparing genelists across species and with different accession numbers.

Nils Blüthgen, Szymon M. Kielbasa, Branka Cajavec, Hanspeter Herzel

Bioinform., 2004

Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors.

Szymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel

Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003

Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules.

Maciej Swat, Alexander E. Kel, Szymon M. Kielbasa, Hanspeter Herzel

Proceedings of the German Conference on Bioinformatics, 2003

2001

Combining frequency and positional information to predict transcription factor binding sites.

Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel

Bioinform., 2001

Visualization and analysis of gene expression data using freeware and GPL-Software.

E. W. Wolski, Christoph K. Wierling, Thomas Kreitler, Szymon M. Kielbasa, U. Schneider, Johan Gobom, Hans Lehrach, Holger Eickhoff

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

2000

Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search.

Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, Hanspeter Herzel

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000