Stavros J. Hamodrakas

According to our database, Stavros J. Hamodrakas authored at least 35 papers between 1988 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

The human GPCR signal transduction network.

Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos

Netw. Model. Anal. Health Informatics Bioinform., 2021

OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins.

Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos

Frontiers Bioinform., 2021

2019

The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields.

Fotis A. Baltoumas, Stavros J. Hamodrakas, Vassiliki A. Iconomidou

J. Comput. Chem., 2019

Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1).

Kostas A. Triantaphyllopoulos, Fotis A. Baltoumas, Stavros J. Hamodrakas

J. Comput. Aided Mol. Des., 2019

2016

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils.

Nikolaos N. Louros, Fotis A. Baltoumas, Stavros J. Hamodrakas, Vassiliki A. Iconomidou

J. Comput. Aided Mol. Des., 2016

Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions.

Fotis A. Baltoumas, Margarita C. Theodoropoulou, Stavros J. Hamodrakas

J. Comput. Aided Mol. Des., 2016

2013

mpMoRFsDB: a database of molecular recognition features in membrane proteins.

Foivos Gypas, Georgios N. Tsaousis, Stavros J. Hamodrakas

Bioinform., 2013

2012

CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria.

Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas

Proceedings of the Artificial Intelligence: Theories and Applications, 2012

2011

OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria.

Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas

Nucleic Acids Res., 2011

2010

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins.

Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas

Bioinform., 2010

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.

Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas

Database J. Biol. Databases Curation, 2010

2009

How Many 3D Structures Do We Need to Train a Predictor?

Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas

Genom. Proteom. Bioinform., 2009

2008

Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes.

Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas

J. Bioinform. Comput. Biol., 2008

gpDB: a database of GPCRs, G-proteins, effectors and their interactions.

Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas

Bioinform., 2008

2006

PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization.

Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas

Genom. Proteom. Bioinform., 2006

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins.

Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas

BMC Bioinform., 2006

2005

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.

Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas

BMC Bioinform., 2005

N-terminal sequence-based prediction of subcellular location.

Evangelia Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas

BMC Bioinform., 2005

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.

Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas

BMC Bioinform., 2005

Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.

Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas

Bioinform., 2005

2004

PRED-GPCR: GPCR recognition and family classification server.

Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas

Nucleic Acids Res., 2004

PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins.

Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas

Nucleic Acids Res., 2004

waveTM: Wavelet-based transmembrane segment prediction.

Evanthia E. Pashou, Zoi I. Litou, Theodore Liakopoulos, Stavros J. Hamodrakas

Silico Biol., 2004

cuticleDB: a relational database of Arthropod cuticular proteins.

Christiana K. Magkrioti, Ioannis C. Spyropoulos, Vassiliki A. Iconomidou, Judith H. Willis, Stavros J. Hamodrakas

BMC Bioinform., 2004

A database for G proteins and their interaction with GPCRs.

Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas

BMC Bioinform., 2004

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.

Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas

BMC Bioinform., 2004

TMRPres2D: high quality visual representation of transmembrane protein models.

Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas

Bioinform., 2004

Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation.

Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas

Proceedings of the Grammatical Inference: Algorithms and Applications, 2004

2003

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets.

Georgios S. Vernikos, Christos G. Gkogkas, Vasilis J. Promponas, Stavros J. Hamodrakas

BMC Bioinform., 2003

Evaluation of annotation strategies using an entire genome sequence.

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis

Bioinform., 2003

2000

CAST: an iterative algorithm for the complexity analysis of sequence tracts.

Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis

Bioinform., 2000

1998

CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods.

Vasilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas

Silico Biol., 1998

A web server to locate periodicities in a sequence.

C. M. Pasquier, Vasilis J. Promponas, N. J. Varvayannis, Stavros J. Hamodrakas

Bioinform., 1998

1995

PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs.

Anastassis Perrakis, C. Constantinides, A. Athanasiades, Stavros J. Hamodrakas

Comput. Appl. Biosci., 1995

1988

A protein secondary structure prediction scheme for the IBM PC and compatibles.

Stavros J. Hamodrakas

Comput. Appl. Biosci., 1988