Simone Pernice

According to our database, Simone Pernice authored at least 22 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.

Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì

BMC Bioinform., December, 2024

From Compositional Petri Net Modeling to Macro and Micro Simulation by Means of Stochastic Simulation and Agent-Based Models.

Elvio Gilberto Amparore, Marco Beccuti, Paolo Castagno, Simone Pernice, Giuliana Franceschinis, Marzio Pennisi

ACM Trans. Model. Perform. Evaluation Comput. Syst., March, 2024

2023

A new computational workflow to guide personalized drug therapy.

Simone Pernice, Alessandro Maglione, Dora Tortarolo, Roberta Sirovich, Marinella Clerico, Simona Rolla, Marco Beccuti, Francesca Cordero

J. Biomed. Informatics, December, 2023

CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system.

Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero

Bioinform., May, 2023

Artificial intelligence methods for biomedical imaging and omics data.

Carlo Alberto Barbano, Marco Beccuti, Francesca Cordero, Desislav Nikolaev Ivanov, Nicola Licheri, Simone Pernice, Alberto Presta, Riccardo Renzulli, Marco Grangetto

Proceedings of the Italia Intelligenza Artificiale, 2023

MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems.

Simone Avesani, Vincenzo Bonnici, Simone Pernice, Marco Beccuti, Rosalba Giugno

Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data.

Dora Tortarolo, Simone Pernice, Fabiana Clapero, Donatella Valdembri, Guido Serini, Federica Riccardo, Lidia Tarone, Chiara Enrico Bena, Carla Bosia, Sandro Gepiro Contaldo, Marco Beccuti, Marzio Pennisi, Francesca Cordero

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

An Agent-Based Model to Support Infection Control Strategies at School.

Daniele Baccega, Simone Pernice, Pietro Terna, Paolo Castagno, Giovenale Moirano, Lorenzo Richiardi, Matteo Sereno, Sergio Rabellino, Milena Maria Maule, Marco Beccuti

J. Artif. Soc. Soc. Simul., 2022

2021

A Petri Net Formalism to Study Systems at Different Scales Exploiting Agent-Based and Stochastic Simulations.

Marco Beccuti, Paolo Castagno, Giuliana Franceschinis, Marzio Pennisi, Simone Pernice

Proceedings of the Performance Engineering and Stochastic Modeling, 2021

Multiformalism modeling and simulation of immune system mechanisms.

Elvio Gilberto Amparore, Marco Beccuti, Paolo Castagno, Giuliana Franceschinis, Marzio Pennisi, Simone Pernice

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.

Simone Pernice, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccoló Totis, Pietro Lió, Ivan Merelli, Francesca Cordero, Marco Beccuti

Fundam. Informaticae, 2020

Computational modeling of the immune response in multiple sclerosis using epimod framework.

Simone Pernice, Laura Follia, Alessandro Maglione, Marzio Pennisi, Francesco Pappalardo, Francesco Novelli, Marinella Clerico, Marco Beccuti, Francesca Cordero, Simona Rolla

BMC Bioinform., 2020

A computational framework for modeling and studying pertussis epidemiology and vaccination.

Paolo Castagno, Simone Pernice, Gianni Ghetti, Massimiliano Povero, Lorenzo Pradelli, Daniela Paolotti, Gianfranco Balbo, Matteo Sereno, Marco Beccuti

BMC Bioinform., 2020

2019

A computational approach based on the colored Petri net formalism for studying multiple sclerosis.

Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero

BMC Bioinform., December, 2019

MethylFASTQ: A Tool Simulating Bisulfite Sequencing Data.

Giulia Beatrice Piaggeschi, Nicola Licheri, Greta Romano, Simone Pernice, Laura Follia, Giulio Ferrero

Proceedings of the 27th Euromicro International Conference on Parallel, 2019

A Tool for the Automatic Derivation of Symbolic ODE from Symmetric Net Models.

Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Laura Follia, Simone Pernice

Proceedings of the 27th IEEE International Symposium on Modeling, 2019

Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions.

Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

Exploiting Stochastic Petri Net formalism to capture the Relapsing Remitting Multiple Sclerosis variability under Daclizumab administration.

Simone Pernice, Greta Romano, Giulia Russo, Marco Beccuti, Marzio Pennisi, Francesco Pappalardo

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

ParallNormal: An Efficient Variant Calling Pipeline for Unmatched Sequencing Data.

Laura Follia, Fabio Tordini, Simone Pernice, Greta Romano, Giulia Beatrice Piaggeschi, Giulio Ferrero

Proceedings of the 26th Euromicro International Conference on Parallel, 2018

GPU Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting Multiple Sclerosis.

Marco Beccuti, Paolo Cazzaniga, Marzio Pennisi, Daniela Besozzi, Marco S. Nobile, Simone Pernice, Giulia Russo, Andrea Tangherloni, Francesco Pappalardo

Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

Deriving Symbolic Ordinary Differential Equations from Stochastic Symmetric Nets Without Unfolding.

Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Simone Pernice

Proceedings of the Computer Performance Engineering - 15th European Workshop, 2018

Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric Nets.

Simone Pernice, Marco Beccuti, Pietro Do', Marzio Pennisi, Francesco Pappalardo

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018