Simon M. Lin

According to our database, Simon M. Lin authored at least 54 papers between 2001 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Multi-View Deep Learning Framework for Predicting Patient Expenditure in Healthcare.

Xianlong Zeng, Simon M. Lin, Chang Liu

IEEE Open J. Comput. Soc., 2021

Pre-training transformer-based framework on large-scale pediatric claims data for downstream population-specific tasks.

Xianlong Zeng, Simon M. Lin, Chang Liu

CoRR, 2021

COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval.

Xinliang Frederick Zhang, Heming Sun, Xiang Yue, Simon M. Lin, Huan Sun

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

CliniQG4QA: Generating Diverse Questions for Domain Adaptation of Clinical Question Answering.

Xiang Yue, Xinliang Frederick Zhang, Ziyu Yao, Simon M. Lin, Huan Sun

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Transformer-based unsupervised patient representation learning based on medical claims for risk stratification and analysis.

Xianlong Zeng, Simon M. Lin, Chang Liu

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020

COUGH: A Challenge Dataset and Models for COVID-19 FAQ Retrieval.

Xinliang Frederick Zhang, Heming Sun, Xiang Yue, Emmett Jesrani, Simon M. Lin, Huan Sun

CoRR, 2020

Graph embedding on biomedical networks: methods, applications and evaluations.

Xiang Yue, Zhen Wang, Jingong Huang, Srinivasan Parthasarathy, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Wen Zhang, Ping Zhang, Huan Sun

Bioinform., 2020

Multilevel Self-Attention Model and Its Use on Medical Risk Prediction.

Xianlong Zeng, Yunyi Feng, Soheil Moosavinasab, Deborah Lin, Simon M. Lin, Chang Liu

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Sequence-to-Set Semantic Tagging for Complex Query Reformulation and Automated Text Categorization in Biomedical IR using Self-Attention.

Manirupa Das, Juanxi Li, Eric Fosler-Lussier, Simon M. Lin, Steve Rust, Yungui Huang, Rajiv Ramnath

Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020

Clinical Phrase Mining with Language Models.

Kaushik Mani, Xiang Yue, Bernal Jimenez Gutierrez, Yungui Huang, Simon M. Lin, Huan Sun

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Tasks Associated With Extreme After-hours EHR Use Among Ambulatory Care Pediatricians.

Selasi Attipoe, Yungui Huang, Sharon B. Schweikhart, Jennifer L. Hefner, Daniel M. Walker, Steven W. Rust, Jeffrey Hoffman, Simon M. Lin

Proceedings of the AMIA 2020, 2020

Rationalizing Medical Relation Prediction from Corpus-level Statistics.

Zhen Wang, Jennifer Lee, Simon M. Lin, Huan Sun

Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020

2019

Transcending Dimensions: a Comparative Analysis of Cloaca Imaging in Advancing the Surgeon's Understanding of Complex Anatomy.

Alessandra C. Gasior, Carlos Reck, Victoria Lane, Richard J. Wood, Jeremy Patterson, Robert Strouse, Simon M. Lin, Jennifer N. Cooper, D. Gregory Bates, Marc A. Levitt

J. Digit. Imaging, 2019

Sequence-to-Set Semantic Tagging: End-to-End Multi-label Prediction using Neural Attention for Complex Query Reformulation and Automated Text Categorization.

Manirupa Das, Juanxi Li, Eric Fosler-Lussier, Simon M. Lin, Soheil Moosavinasab, Steve Rust, Yungui Huang, Rajiv Ramnath

CoRR, 2019

Distributed representation of patients and its use for medical cost prediction.

Xianlong Zeng, Soheil Moosavinasab, En-Ju D. Lin, Simon M. Lin, Razvan C. Bunescu, Chang Liu

CoRR, 2019

Device-free Sleep Stage Recognition through Bed Frame Vibration Sensing.

Zhizhang Hu, Emre Sezgin, Simon M. Lin, Pei Zhang, Hae Young Noh, Shijia Pan

Proceedings of the 1st ACM International Workshop on Device-Free Human Sensing, 2019

SurfCon: Synonym Discovery on Privacy-Aware Clinical Data.

Zhen Wang, Xiang Yue, Soheil Moosavinasab, Yungui Huang, Simon M. Lin, Huan Sun

Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2019

Identifying Candidates for Medical Coding Audits: Demonstration of a Data Driven Approach to Improve Medicare Severity Diagnosis-Related Group Coding Compliance.

Yunyi Feng, Simon M. Lin, Enju Lin, Lesley Farley, Yungui Huang, Chang Liu

Proceedings of the Health Information Science - 8th International Conference, 2019

2018

Phrase2VecGLM: Neural generalized language model-based semantic tagging for complex query reformulation in medical IR.

Manirupa Das, Eric Fosler-Lussier, Simon M. Lin, Soheil Moosavinasab, David Chen, Steve Rust, Yungui Huang, Rajiv Ramnath

Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

Prediction of Clinical Outcomes of Spinal Muscular Atrophy Using Motion Tracking Data and Elastic Net Regression.

David Chen, Steve Rust, En-Ju D. Lin, Simon M. Lin, Leslie Nelson, Lindsay Alfano, Linda P. Lowes

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

DeepChild: Hospitalization Prediction via Neural Network.

Xianlong Zeng, Soheil Moosavinasab, Enju Lin, Yungui Huang, Chang Liu, Simon M. Lin

Proceedings of the AMIA 2018, 2018

A roadmap of transition to health independence: A patient-centered study of self-management and digital-health solutions among teens with chronic conditions.

Emre Sezgin, Monica Weiler, Anthony Weiler, Simon M. Lin

Proceedings of the AMIA 2018, 2018

Char2Vec: Learning the Semantic Embedding of Rare and Unseen Words in the Biomedical Literature.

Syed-Amad A. Hussain, Soheil Moosavinasab, Emre Sezgin, Yungui Huang, Simon M. Lin

Proceedings of the AMIA 2018, 2018

Variation in After-hours EHR Usage among Ambulatory Care Physicians.

Selasi Attipoe, Yungui Huang, Sharon B. Schweikhart, Simon M. Lin

Proceedings of the AMIA 2018, 2018

2017

Simplified Readability Metric Drives Improvement of Radiology Reports: an Experiment on Ultrasound Reports at a Pediatric Hospital.

Wei Chen, Claire Durkin, Yungui Huang, Brent Adler, Steve Rust, Simon M. Lin

J. Digit. Imaging, 2017

Clinical exome sequencing reports: current informatics practice and future opportunities.

Rajeswari Swaminathan, Yungui Huang, Caroline Astbury, Sara Fitzgerald-Butt, Katherine Miller, Justin Cole, Christopher W. Bartlett, Simon M. Lin

J. Am. Medical Informatics Assoc., 2017

Sharing exome sequencing data between Clinical Sequencing Labs and Healthcare Providers.

Rajeswari Swaminathan, Yungui Huang, Katherine Miller, Matthew Pastore, Sayaka Hashimoto, Theodora Jacobson, Danielle Mouhlas, Simon M. Lin

Proceedings of the AMIA 2017, 2017

DeepSuggest: Query Expansion for Clinical Notes by Deep Learning.

Emre Sezgin, Koushik Jinna, Tran Bourgeois, Soheil Moosavinasab, Yungui Huang, Simon M. Lin

Proceedings of the AMIA 2017, 2017

Genome Dashboard: An Interactive Tool for the Exploration of Human Genomic Variants and Phenotypic Associations.

Katherine Miller, Rajeswari Swaminathan, Soheil Moosavinasab, Robert Strouse, Matthew Bailey, Yungui Huang, Simon M. Lin

Proceedings of the AMIA 2017, 2017

Vitals Risk Index: A Simplified Pediatric Early Warning Index that Relies Solely on Objective Measures.

Tyler Gorham, Steven W. Rust, Jing Yang, James Lin, Richard Hoyt, Swan Bee Liu, Jeffrey Hoffman, Tensing Maa, Yungui Huang, Simon M. Lin

Proceedings of the AMIA 2017, 2017

2016

WHATIF: An open-source desktop application for extraction and management of the incidental findings from next-generation sequencing variant data.

Zhan Ye, Christopher Kadolph, Robert Strenn, Daniel Wall, Elizabeth McPherson, Simon M. Lin

Comput. Biol. Medicine, 2016

'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities.

Soheil Moosavinasab, Jeremy Patterson, Robert Strouse, Majid Rastegar-Mojarad, Kelly Regan, Philip R. O. Payne, Yungui Huang, Simon M. Lin

Database J. Biol. Databases Curation, 2016

Evaluation of a Machine Learning Method to Rank PubMed Central Articles For Clinical Relevancy: NCH at TREC 2016 Clinical Decision Support Track.

Wei Chen, Soheil Moosavinasab, Steve Rust, Yungui Huang, Simon M. Lin, Anna Zemke, Ariana Prinzbach

Proceedings of The Twenty-Fifth Text REtrieval Conference, 2016

2015

Investigating properties of a family of quantum Rényi divergences.

Simon M. Lin, Marco Tomamichel

Quantum Inf. Process., 2015

Application of clinical text data for phenome-wide association studies (PheWASs).

Scott J. Hebbring, Majid Rastegar-Mojarad, Zhan Ye, John Mayer, Crystal Jacobson, Simon M. Lin

Bioinform., 2015

2014

Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing.

Matthew Fredrikson, Eric Lantz, Somesh Jha, Simon M. Lin, David Page, Thomas Ristenpart

Proceedings of the 23rd USENIX Security Symposium, San Diego, CA, USA, August 20-22, 2014., 2014

Mining massive SNP data for identifying associated SNPs and uncovering gene relationships.

Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

The disease and gene annotations (DGA): an annotation resource for human disease.

Kai Peng, Wei Xu, Jianyong Zheng, Kegui Huang, Huisong Wang, Jiansong Tong, Zhifeng Lin, Jun Liu, Wenqing Cheng, Dong Fu, Pan Du, Warren A. Kibbe, Simon M. Lin, Tian Xia

Nucleic Acids Res., 2013

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics.

Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce

Proceedings of the MEDINFO 2013, 2013

2011

<i>PLoS Computational Biology</i> Conference Postcards from ISMB/ECCB 2011.

Pedro Madrigal, Noa Sela, Simon M. Lin

PLoS Comput. Biol., 2011

2010

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.

Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Hervé Pagès, Simon M. Lin, David S. Lapointe, Michael R. Green

BMC Bioinform., 2010

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.

Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A. Kibbe, Lifang Hou, Simon M. Lin

BMC Bioinform., 2010

2009

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.

Pan Du, Gang Feng, Jared Flatow, Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin

Bioinform., 2009

2008

A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays.

Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe

Int. J. Comput. Biol. Drug Des., 2008

2009 and beyond: the decade of personalised medicine.

Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang

Int. J. Comput. Biol. Drug Des., 2008

<i>lumi</i>: a pipeline for processing Illumina microarray.

Pan Du, Warren A. Kibbe, Simon M. Lin

Bioinform., 2008

2007

Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing.

Pan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.

Pan Du, Warren A. Kibbe, Simon M. Lin

Bioinform., 2006

2004

MedlineR: an open source library in R for Medline literature data mining.

Simon M. Lin, Patrick McConnell, Kimberly F. Johnson, Jennifer Shoemaker

Bioinform., 2004

2002

Sequential modeling for identifying CpG island locations in human genome.

Nilanjan Dasgupta, Simon M. Lin, Lawrence Carin

IEEE Signal Process. Lett., 2002

Applications of Tree-Maps to hierarchical biological data.

Patrick McConnell, Kimberly F. Johnson, Simon M. Lin

Bioinform., 2002

ICA and PLS modeling for functional analysis and drug sensitivity for DNA microarray signals.

Xuejun Liao, Nilanjan Dasgupta, Simon M. Lin, Lawrence Carin

Proceedings of the IEEE International Conference on Acoustics, 2002

2001

Critical Assessment of Microarray Data Analysis: the 2001 challenge.

Kimberly F. Johnson, Simon M. Lin

Bioinform., 2001

Extracting knowledge from gene expression data: A case study of Batten Disease.

Simon M. Lin, Sumeer Dhar, Rose-Mary N. Boustany

Proceedings of the ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2001), 2001