Romain Lopez

According to our database, Romain Lopez authored at least 16 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Sequential Optimal Experimental Design of Perturbation Screens Guided by Multi-modal Priors.

Kexin Huang, Romain Lopez, Jan-Christian Hütter, Takamasa Kudo, Antonio Rios, Aviv Regev

Proceedings of the Research in Computational Molecular Biology, 2024

Toward the Identifiability of Comparative Deep Generative Models.

Romain Lopez, Jan-Christian Hütter, Ehsan Hajiramezanali, Jonathan K. Pritchard, Aviv Regev

Proceedings of the Causal Learning and Reasoning, 2024

2023

A Supervised Contrastive Framework for Learning Disentangled Representations of Cellular Perturbation Data.

Xinming Tu, Jan-Christian Hütter, Zitong Jerry Wang, Takamasa Kudo, Aviv Regev, Romain Lopez

Proceedings of the Machine Learning in Computational Biology, November 30, 2023

Learning Causal Representations of Single Cells via Sparse Mechanism Shift Modeling.

Romain Lopez, Natasa Tagasovska, Stephen Ra, Kyunghyun Cho, Jonathan K. Pritchard, Aviv Regev

Proceedings of the Conference on Causal Learning and Reasoning, 2023

NODAGS-Flow: Nonlinear Cyclic Causal Structure Learning.

Muralikrishnna G. Sethuraman, Romain Lopez, Rahul Mohan, Faramarz Fekri, Tommaso Biancalani, Jan-Christian Hütter

Proceedings of the International Conference on Artificial Intelligence and Statistics, 2023

2022

Large-Scale Differentiable Causal Discovery of Factor Graphs.

Romain Lopez, Jan-Christian Hütter, Jonathan K. Pritchard, Aviv Regev

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Disentangling shared and group-specific variations in single-cell transcriptomics data with multiGroupVI.

Ethan Weinberger, Romain Lopez, Jan-Christian Hütter, Aviv Regev

Proceedings of the Machine Learning in Computational Biology, 21-22 November 2022, Online, 2022

2021

Charting Cellular States, One Cell at a Time: Computational, Inferential and Modeling Perspectives.

Romain Lopez

PhD thesis, 2021

Learning from eXtreme Bandit Feedback.

Romain Lopez, Inderjit S. Dhillon, Michael I. Jordan

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020

Decision-Making with Auto-Encoding Variational Bayes.

Romain Lopez, Pierre Boyeau, Nir Yosef, Michael I. Jordan, Jeffrey Regier

Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Cost-Effective Incentive Allocation via Structured Counterfactual Inference.

Romain Lopez, Chenchen Li, Xiang Yan, Junwu Xiong, Michael I. Jordan, Yuan Qi, Le Song

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019

A joint model of unpaired data from scRNA-seq and spatial transcriptomics for imputing missing gene expression measurements.

Romain Lopez, Achille Nazaret, Maxime Langevin, Jules Samaran, Jeffrey Regier, Michael I. Jordan, Nir Yosef

CoRR, 2019

2018

A Deep Generative Model for Semi-Supervised Classification with Noisy Labels.

Maxime Langevin, Edouard Mehlman, Jeffrey Regier, Romain Lopez, Michael I. Jordan, Nir Yosef

CoRR, 2018

Information Constraints on Auto-Encoding Variational Bayes.

Romain Lopez, Jeffrey Regier, Michael I. Jordan, Nir Yosef

Proceedings of the Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, 2018

2017

A deep generative model for gene expression profiles from single-cell RNA sequencing.

Romain Lopez, Jeffrey Regier, Michael I. Jordan, Nir Yosef

CoRR, 2017

2013

Raycast based auto-rigging method for humanoid meshes.

Romain Lopez, Christophe Poirel

Proceedings of the Special Interest Group on Computer Graphics and Interactive Techniques Conference, 2013