Robert Leaman

Orcid: 0000-0003-3296-5766

According to our database1, Robert Leaman authored at least 56 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
EnzChemRED, a rich enzyme chemistry relation extraction dataset.
CoRR, 2024

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge.
CoRR, 2024

2023
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.
Bioinform., May, 2023

Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.
Patterns, January, 2023

LitCovid in 2022: an information resource for the COVID-19 literature.
Nucleic Acids Res., January, 2023

PubMed and Beyond: Recent Advances and Best Practices in Biomedical Literature Search.
CoRR, 2023

Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII.
Database J. Biol. Databases Curation, 2023

2022
Comprehensive identification of Long Covid articles with human-in-the-loop machine learning.
CoRR, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
CoRR, 2022

NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles.
Database J. Biol. Databases Curation, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database J. Biol. Databases Curation, 2022

2021
Long Covid: A Comprehensive Collection of Articles Regarding Long-Haul Symptoms in COVID-19 Survivors.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

NLM-Chem, a Gold-Standard Corpus for Chemical Entity Recognition in PubMed Full Text Literature.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP).
CoRR, 2020

Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.
CoRR, 2020

A Comprehensive Dictionary and Term Variation Analysis for COVID-19 and SARS-CoV-2.
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020

2019
PubTator central: automated concept annotation for biomedical full text articles.
Nucleic Acids Res., 2019


Biomedical Mention Disambiguation using a Deep Learning Approach.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

A Text-Mining System for Concept Annotation in Biomedical Full Text Articles.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
ezTag: tagging biomedical concepts via interactive learning.
Nucleic Acids Res., 2018

2016
Beyond accuracy: creating interoperable and scalable text-mining web services.
Bioinform., 2016

TaggerOne: joint named entity recognition and normalization with semi-Markov Models.
Bioinform., 2016

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Database J. Biol. Databases Curation, 2016

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.
Database J. Biol. Databases Curation, 2016

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Database J. Biol. Databases Curation, 2016

Mining chemical patents with an ensemble of open systems.
Database J. Biol. Databases Curation, 2016

Crowdsourcing in biomedicine: challenges and opportunities.
Briefings Bioinform., 2016

Large-scale Semantic Indexing with Biomedical Ontologies.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedical Text.
IEEE J. Biomed. Health Informatics, 2015

tmChem: a high performance approach for chemical named entity recognition and normalization.
J. Cheminformatics, 2015

The CHEMDNER corpus of chemicals and drugs and its annotation principles.
J. Cheminformatics, 2015

Challenges in clinical natural language processing for automated disorder normalization.
J. Biomed. Informatics, 2015

Session Introduction.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
NCBI disease corpus: A resource for disease name recognition and concept normalization.
J. Biomed. Informatics, 2014

<i>tmBioC</i>: improving interoperability of text-mining tools with BioC.
Database J. Biol. Databases Curation, 2014

Session introduction.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Automated Disease Normalization with Low Rank Approximations.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

SimConcept: a hybrid approach for simplifying composite named entities in biomedicine.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Disease named entity recognition and normalization with DNorm.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
DNorm: disease name normalization with pairwise learning to rank.
Bioinform., 2013

Session introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

NCBI at 2013 ShARe/CLEF eHealth Shared Task: Disorder Normalization in Clinical Notes with Dnorm.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

DNorm: A New Method and Online Tool for Disease Name Normalization.
Proceedings of the AMIA 2013, 2013

NCBI Disease Corpus: A Valuable Resource for Disease Name Recognition and Normalization.
Proceedings of the AMIA 2013, 2013

2012
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions.
J. Biomed. Informatics, 2012

2011
Enhancing phylogeography by improving geographical information from GenBank.
J. Biomed. Informatics, 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinform., 2011

The DIEGO Lab Graph Based Gene Normalization System.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

2010
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2010

Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2008
BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition.
Proceedings of the Biocomputing 2008, 2008

Inter-species normalization of gene mentions with GNAT.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Passage Relevancy Through Semantic Relatedness.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

2006
ASU at TREC 2006 Genomics Track.
Proceedings of the Fifteenth Text REtrieval Conference, 2006


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