Michela Taufer
Orcid: 0000-0002-0031-6377Affiliations:
- University of Tennesee, Knoxville, Knoxville, TN, USA
- University of Delaware, USA
According to our database1,
Michela Taufer
authored at least 187 papers
between 1996 and 2024.
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Bibliography
2024
Recognition of best paper, outstanding editors, and outstanding reviewers for Future Generation Computer Systems in 2023.
Future Gener. Comput. Syst., 2024
2023
Orchestration of materials science workflows for heterogeneous resources at large scale.
Int. J. High Perform. Comput. Appl., July, 2023
A Survey of Graph Comparison Methods with Applications to Nondeterminism in High-Performance Computing.
Int. J. High Perform. Comput. Appl., July, 2023
Future Gener. Comput. Syst., June, 2023
Building Trust in Earth Science Findings through Data Traceability and Results Explainability.
IEEE Trans. Parallel Distributed Syst., February, 2023
Enhancing Scientific Research with FAIR Digital Objects in the National Science Data Fabric.
Comput. Sci. Eng., 2023
Concurr. Comput. Pract. Exp., 2023
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables.
Proceedings of the Platform for Advanced Scientific Computing Conference, 2023
Proceedings of the 52nd International Conference on Parallel Processing, 2023
Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification.
Proceedings of the 52nd International Conference on Parallel Processing, 2023
GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution Terrain Parameters.
Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing, 2023
Studying Latency and Throughput Constraints for Geo-Distributed Data in the National Science Data Fabric.
Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing, 2023
Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing, 2023
Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to Democratize Access to Platforms and Data.
Proceedings of the Distributed, Ambient and Pervasive Interactions, 2023
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations.
Proceedings of the 19th IEEE International Conference on e-Science, 2023
Proceedings of the IEEE International Conference on Cluster Computing, 2023
Proceedings of the IEEE International Conference on Cluster Computing, 2023
Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use Case.
Proceedings of the 16th IEEE International Conference on Cloud Computing, 2023
2022
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger.
Dataset, May, 2022
Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine.
IEEE Trans. Parallel Distributed Syst., 2022
IEEE Trans. Parallel Distributed Syst., 2022
Remote. Sens., 2022
Analysis of Vector Particle-In-Cell (VPIC) memory usage optimizations on cutting-edge computer architectures.
J. Comput. Sci., 2022
Int. J. High Perform. Comput. Appl., 2022
Int. J. High Perform. Comput. Appl., 2022
Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration.
Comput. Sci. Eng., 2022
Reproducibility of the First Image of a Black Hole in the Galaxy M87 from the Event Horizon Telescope (EHT) Collaboration.
CoRR, 2022
Designing an Interactive, Notebook-Embedded, Tree Visualization to Support Exploratory Performance Analysis.
CoRR, 2022
Proceedings of the IEEE/ACM Workshop on Workflows in Support of Large-Scale Science, 2022
Proceedings of the 15th IEEE/ACM International Conference on Utility and Cloud Computing, 2022
A Research-Based Course Module to Study Non-determinism in High Performance Applications.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
Proceedings of the HPDC '22: The 31st International Symposium on High-Performance Parallel and Distributed Computing, Minneapolis, MN, USA, 27 June 2022, 2022
Proceedings of the HPDC '22: The 31st International Symposium on High-Performance Parallel and Distributed Computing, Minneapolis, MN, USA, 27 June 2022, 2022
Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC Workflows.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Proceedings of the 18th IEEE International Conference on e-Science, 2022
A Methodology to Generate Efficient Neural Networks for Classification of Scientific Datasets.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Reproducing and Extending Analytical Performance Models of Generalized Hierarchical Scheduling.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Enabling Call Path Querying in Hatchet to Identify Performance Bottlenecks in Scientific Applications.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
Augmenting Singularity to Generate Fine-grained Workflows, Record Trails, and Data Provenance.
Proceedings of the 18th IEEE International Conference on e-Science, 2022
2021
Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels.
IEEE Trans. Parallel Distributed Syst., 2021
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Softw. Impacts, 2021
J. Comput. Sci., 2021
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger.
Comput. Sci. Eng., 2021
PEng4NN: An Accurate Performance Estimation Engine for Efficient Automated Neural Network Architecture Search.
CoRR, 2021
Proceedings of the ICPP Workshops 2021: 50th International Conference on Parallel Processing, 2021
Optimize Memory Usage in Vector Particle-In-Cell (VPIC) to Break the 10 Trillion Particle Barrier in Plasma Simulations.
Proceedings of the Computational Science - ICCS 2021, 2021
Proceedings of the 28th IEEE International Conference on High Performance Computing, 2021
A Roadmap to Robust Science for High-throughput Applications: The Scientists' Perspective.
Proceedings of the 17th IEEE International Conference on eScience, 2021
Proceedings of the 17th IEEE International Conference on eScience, 2021
A Roadmap to Robust Science for High-throughput Applications: The Developers' Perspective.
Proceedings of the IEEE International Conference on Cluster Computing, 2021
2020
IEEE Trans. Parallel Distributed Syst., 2020
Building a Vision for Reproducibility in the Cyberinfrastructure Ecosystem: Leveraging Community Efforts.
Supercomput. Front. Innov., 2020
Spatial Gap-Filling of ESA CCI Satellite-Derived Soil Moisture Based on Geostatistical Techniques and Multiple Regression.
Remote. Sens., 2020
Future Gener. Comput. Syst., 2020
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger.
CoRR, 2020
Building Containerized Environments for Reproducibility and Traceability of Scientific Workflows.
CoRR, 2020
Proceedings of the IEEE/ACM International Workshop on HPC User Support Tools and Workshop on Programming and Performance Visualization Tools, 2020
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020
Proceedings of the Computational Science - ICCS 2020, 2020
2019
Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications.
Int. J. High Perform. Comput. Netw., 2019
A three-phase workflow for general and expressive representations of nondeterminism in HPC applications.
Int. J. High Perform. Comput. Appl., 2019
SOMOSPIE: A modular SOil MOisture SPatial Inference Engine based on data driven decision.
CoRR, 2019
Studying the Impact of Power Capping on MapReduce-based, Data-intensive Mini-applications on Intel KNL and KNM Architectures.
CoRR, 2019
Characterization of Power Usage and Performance in Data-Intensive Applications Using MapReduce over MPI.
Proceedings of the Parallel Computing: Technology Trends, 2019
Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing, 2019
Proceedings of the 2nd International Workshop on Practical Reproducible Evaluation of Computer Systems, 2019
Proceedings of the 2nd International Workshop on Practical Reproducible Evaluation of Computer Systems, 2019
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers.
Proceedings of the 15th International Conference on eScience, 2019
SOMOSPIE: A Modular SOil MOisture SPatial Inference Engine Based on Data-Driven Decisions.
Proceedings of the 15th International Conference on eScience, 2019
2018
Supercomput. Front. Innov., 2018
Proceedings of the 2018 ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, 2018
Proceedings of the 47th International Conference on Parallel Processing, 2018
Proceedings of the 47th International Conference on Parallel Processing, 2018
Proceedings of the 24th IEEE International Conference on Parallel and Distributed Systems, 2018
Leveraging In Situ Data Analysis to Enable Computational Steering of Brain's Neocortex Simulations with GENESIS.
Proceedings of the 20th IEEE International Conference on High Performance Computing and Communications; 16th IEEE International Conference on Smart City; 4th IEEE International Conference on Data Science and Systems, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers.
Parallel Comput., 2017
J. Comput. Chem., 2017
Scheduling DAG-based workflows on single cloud instances: High-performance and cost effectiveness with a static scheduler.
Int. J. High Perform. Comput. Appl., 2017
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017
Proceedings of the 23rd IEEE International Conference on Parallel and Distributed Systems, 2017
Data analytics for modeling soil moisture patterns across united states ecoclimatic domains.
Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017
2016
Parallel Comput., 2016
Proceedings of the High Performance Computing - 31st International Conference, 2016
Proceedings of the 28th International Symposium on Computer Architecture and High Performance Computing, 2016
Proceedings of the 28th International Symposium on Computer Architecture and High Performance Computing, 2016
Proceedings of the 22nd IEEE International Conference on Parallel and Distributed Systems, 2016
Proceedings of the ACM 7th Workshop on Scientific Cloud Computing, 2016
Proceedings of the 25th ACM International Symposium on High-Performance Parallel and Distributed Computing, 2016
Proceedings of the 2016 IEEE International Conference on Cluster Computing, 2016
Development of a Scalable Method for Creating Food Groups Using the NHANES Dataset and MapReduce.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations.
J. Comput. Chem., 2015
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015
A Testing Engine for High-Performance and Cost-Effective Workflow Execution in the Cloud.
Proceedings of the 44th International Conference on Parallel Processing, 2015
A Genetic Programming Approach to Design Resource Allocation Policies for Heterogeneous Workflows in the Cloud.
Proceedings of the 21st IEEE International Conference on Parallel and Distributed Systems, 2015
Proceedings of the International Conference on Computational Science, 2015
From HPC Performance to Climate Modeling: Transforming Methods for HPC Predictions into Models of Extreme Climate Conditions.
Proceedings of the 11th IEEE International Conference on e-Science, 2015
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015
On the Need for Reproducible Numerical Accuracy through Intelligent Runtime Selection of Reduction Algorithms at the Extreme Scale.
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015
Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015
2014
Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations.
IEEE Des. Test, 2014
Proceedings of the 15th International Conference on Parallel and Distributed Computing, 2014
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014
Benchmarking the Performance of Scientific Applications with Irregular I/O at the Extreme Scale.
Proceedings of the 43rd International Conference on Parallel Processing Workshops, 2014
Using surrogate-based modeling to predict optimal I/O parameters of applications at the extreme scale.
Proceedings of the 20th IEEE International Conference on Parallel and Distributed Systems, 2014
Study of the Network Impact on Earthquake Early Warning in the Quake-catcher Network Project.
Proceedings of the International Conference on Computational Science, 2014
Proceedings of the IEEE Frontiers in Education Conference, 2014
Applying frequency analysis techniques to dag-based workflows to benchmark and predict resource behavior on non-dedicated clusters.
Proceedings of the 2014 IEEE International Conference on Cluster Computing, 2014
2013
On the powerful use of simulations in the Quake-Catcher Network to efficiently position low-cost earthquake sensors.
Future Gener. Comput. Syst., 2013
Comput. Sci. Eng., 2013
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013
Proceedings of the 9th IEEE International Conference on eScience, 2013
Proceedings of the 9th IEEE International Conference on eScience, 2013
On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce.
Proceedings of the 16th IEEE International Conference on Computational Science and Engineering, 2013
Proceedings of the 16th IEEE International Conference on Computational Science and Engineering, 2013
2012
Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms.
J. Comput. Phys., 2012
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach.
Comput. Biol. Medicine, 2012
Proceedings of the 2012 SC Companion: High Performance Computing, 2012
On the effectiveness of application-aware self-management for scientific discovery in volunteer computing systems.
Proceedings of the SC Conference on High Performance Computing Networking, 2012
Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce.
Proceedings of the 14th IEEE International Conference on High Performance Computing and Communication & 9th IEEE International Conference on Embedded Software and Systems, 2012
Proceedings of the 8th IEEE International Conference on E-Science, 2012
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
Evaluation of Several Two-Step Scoring Functions Based on Linear Interaction Energy, Effective Ligand Size, and Empirical Pair Potentials for Prediction of Protein-Ligand Binding Geometry and Free Energy.
J. Chem. Inf. Model., 2011
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs).
J. Comput. Chem., 2011
Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors.
J. Comput. Chem., 2011
Special issue of computer communications on information and future communication security.
Comput. Commun., 2011
Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce.
Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011
Proceedings of the 13th IEEE International Conference on High Performance Computing & Communication, 2011
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011
On the Powerful Use of Simulations in the Quake-Catcher Network to Efficiently Position Low-cost Earthquake Sensors.
Proceedings of the IEEE 7th International Conference on E-Science, 2011
2010
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010
A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions.
Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2009
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots.
Nucleic Acids Res., 2009
Performance Prediction and Analysis of BOINC Projects: An Empirical Study with EmBOINC.
J. Grid Comput., 2009
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009
MNEMONIC: A Network Environment for Automatic Optimization and Tuning of Data Movement over Advanced Networks.
Proceedings of the 18th International Conference on Computer Communications and Networks, 2009
Balancing Scientist Needs and Volunteer Preferences in Volunteer Computing Using Constraint Optimization.
Proceedings of the Computational Science, 2009
Proceedings of the 9th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2008
A distributed evolutionary method to design scheduling policies for volunteer computing.
SIGMETRICS Perform. Evaluation Rev., 2008
RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology.
Parallel Comput., 2008
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
2007
Evaluation of IEEE 754 floating-point arithmetic compliance across a wide range of heterogeneous computers.
Proceedings of the Richard Tapia Celebration of Diversity in Computing Conference 2007, 2007
SimBA: A Discrete Event Simulator for Performance Prediction of Volunteer Computing Projects.
Proceedings of the 21st International Workshop on Principles of Advanced and Distributed Simulation, 2007
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
2006
Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing.
IEEE Trans. Parallel Distributed Syst., 2006
Poster reception - SimBA: a discrete event simulator for performance prediction of volunteer computing projects.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
compPknots: A Framework for Parallel Prediction and Comparison of RNA Secondary Structures with Pseudoknots.
Proceedings of the Frontiers of High Performance Computing and Networking, 2006
A systematic multi-step methodology for performance analysis of communication traces of distributed applications based on hierarchical clustering.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006
Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006
2005
J. Supercomput., 2005
Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics.
Concurr. Comput. Pract. Exp., 2005
Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005
2004
Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
2003
Implementation and Characterization of Protein Folding on a Desktop Computational Grid - Is CHARMM a Suitable Candidate for the United Devices MetaProcessor?
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003
Proceedings of the 2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 2003
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform.
Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003
2002
Inverting middleware: performance analysis of layered application codes in high performance distributed computing.
PhD thesis, 2002
Proceedings of the Fourteenth Annual ACM Symposium on Parallel Algorithms and Architectures, 2002
Performance Characterization of a Molecular Dynamics Code on PC Clusters: Is There Any Easy Parallelism in CHARMM?.
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
On the Migration of the Scientific Code Dyana from SMPs to Clusters of PCs and on to the Grid.
Proceedings of the 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 2002
1998
Accurate Performance Evaluation, Modelling and Prediction of a Message Passing Simulation Code based on Middleware.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1998
1996
Proceedings of the Parallel Virtual Machine, 1996