Mark A. van de Wiel

According to our database, Mark A. van de Wiel authored at least 33 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

ecpc: an R-package for generic co-data models for high-dimensional prediction.

Mirrelijn M. van Nee, Lodewyk F. A. Wessels, Mark A. van de Wiel

BMC Bioinform., December, 2023

Penalized regression with multiple sources of prior effects.

Armin Rauschenberger, Zied Landoulsi, Mark A. van de Wiel, Enrico Glaab

Bioinform., December, 2023

Estimation of predictive performance in high-dimensional data settings using learning curves.

Jeroen M. Goedhart, Thomas Klausch, Mark A. van de Wiel

Comput. Stat. Data Anal., April, 2023

Co-data Learning for Bayesian Additive Regression Trees.

Jeroen M. Goedhart, Thomas Klausch, Jurriaan Janssen, Mark A. van de Wiel

CoRR, 2023

Percolate: An Exponential Family JIVE Model to Design DNA-Based Predictors of Drug Response.

Soufiane Mourragui, Marco Loog, Mirrelijn M. van Nee, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F. A. Wessels

Proceedings of the Research in Computational Molecular Biology, 2023

2022

Estimation of variance components, heritability and the ridge penalty in high-dimensional generalized linear models.

Jurre R. Veerman, Gwenaël G. R. Leday, Mark A. van de Wiel

Commun. Stat. Simul. Comput., 2022

2021

Fast Cross-validation for Multi-penalty High-dimensional Ridge Regression.

Mark A. van de Wiel, Mirrelijn M. van Nee, Armin Rauschenberger

J. Comput. Graph. Stat., 2021

Predictive and interpretable models via the stacked elastic net.

Armin Rauschenberger, Enrico Glaab, Mark A. van de Wiel

Bioinform., 2021

2020

Updating of the Gaussian graphical model through targeted penalized estimation.

Wessel N. van Wieringen, Koen A. Stam, Carel F. W. Peeters, Mark A. van de Wiel

J. Multivar. Anal., 2020

The spectral condition number plot for regularization parameter evaluation.

Carel F. W. Peeters, Mark A. van de Wiel, Wessel N. van Wieringen

Comput. Stat., 2020

Sparse classification with paired covariates.

Armin Rauschenberger, Iuliana Ciocanea-Teodorescu, Marianne A. Jonker, Renée X. de Menezes, Mark A. van de Wiel

Adv. Data Anal. Classif., 2020

2019

Stable prediction with radiomics data.

Carel F. W. Peeters, Caroline Übelhör, Steven W. Mes, Roland Martens, Thomas Koopman, Pim de Graaf, Floris H. P. van Velden, Ronald Boellaard, Jonas A. Castelijns, Dennis E. te Beest, Martijn W. Heymans, Mark A. van de Wiel

CoRR, 2019

PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors.

Soufiane Mourragui, Marco Loog, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F. A. Wessels

Bioinform., 2019

2017

Improved high-dimensional prediction with Random Forests by the use of co-data.

Dennis E. te Beest, Steven W. Mes, Saskia M. Wilting, Ruud H. Brakenhoff, Mark A. van de Wiel

BMC Bioinform., 2017

Better diagnostic signatures from RNAseq data through use of auxiliary co-data.

Putri W. Novianti, Barbara C. Snoek, Saskia M. Wilting, Mark A. van de Wiel

Bioinform., 2017

2016

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes.

Evert van den Broek, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman, Sanne Abeln

F1000Research, 2016

Testing for association between RNA-Seq and high-dimensional data.

Armin Rauschenberger, Marianne A. Jonker, Mark A. van de Wiel, Renée X. de Menezes

BMC Bioinform., 2016

2015

Semi-supervised adaptive-height snipping of the hierarchical clustering tree.

Askar Obulkasim, Gerrit A. Meijer, Mark A. van de Wiel

BMC Bioinform., 2015

2014

ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs.

Mark A. van de Wiel, Maarten Neerincx, Tineke E. Buffart, Daoud Sie, Henk M. W. Verheul

BMC Bioinform., 2014

tigaR: integrative significance analysis of temporal differential gene expression induced by genomic abnormalities.

Viktorian Miok, Saskia M. Wilting, Mark A. van de Wiel, Annelieke Jaspers, Paula I. van Noort, Ruud H. Brakenhoff, Peter J. F. Snijders, Renske D. M. Steenbergen, Wessel N. van Wieringen

BMC Bioinform., 2014

2013

PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data.

Gwenaël G. R. Leday, Mark A. van de Wiel

Bioinform., 2013

2012

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses.

Wessel N. van Wieringen, Kristian Unger, Gwenaël G. R. Leday, Oscar Krijgsman, Renée X. de Menezes, Bauke Ylstra, Mark A. van de Wiel

BMC Bioinform., 2012

2011

Exploratory Factor Analysis of Pathway Copy Number Data with an Application Towards the Integration with Gene Expression Data.

Wessel N. van Wieringen, Mark A. van de Wiel

J. Comput. Biol., 2011

Stepwise classification of cancer samples using clinical and molecular Data.

Askar Obulkasim, Gerrit Meijer, Mark A. van de Wiel

BMC Bioinform., 2011

Preprocessing and downstream analysis of microarray DNA copy number profiles.

Mark A. van de Wiel, Franck Picard, Wessel N. van Wieringen, Bauke Ylstra

Briefings Bioinform., 2011

2010

CGHpower: exploring sample size calculations for chromosomal copy number experiments.

Ilari Scheinin, Jose A. Ferreira, Sakari Knuutila, Gerrit Meijer, Mark A. van de Wiel, Bauke Ylstra

BMC Bioinform., 2010

2009

Smoothing waves in array CGH tumor profiles.

Mark A. van de Wiel, Rebecca Brosens, Paul H. C. Eilers, Candy Kumps, Gerrit Meijer, Björn Menten, Erik Sistermans, Frank Speleman, Marieke E. Timmerman, Bauke Ylstra

Bioinform., 2009

2008

Effects of dependence in high-dimensional multiple testing problems.

Kyung In Kim, Mark A. van de Wiel

BMC Bioinform., 2008

2007

Some Comments on False Discovery Rate.

Avner Bar-Hen, Kyung In Kim, Mark A. van de Wiel

J. Bioinform. Comput. Biol., 2007

CGHcall: calling aberrations for array CGH tumor profiles.

Mark A. van de Wiel, Kyung In Kim, Sjoerd J. Vosse, Wessel N. van Wieringen, Saskia M. Wilting, Bauke Ylstra

Bioinform., 2007

2006

A Note on Sample Size Determination for a Nonparametric Test of Location.

Subhabrata Chakraborti, B. Hong, Mark A. van de Wiel

Technometrics, 2006

2005

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.

Mark A. van de Wiel, Serge J. Smeets, Ruud H. Brakenhoff, Bauke Ylstra

Bioinform., 2005

2001

The split-up algorithm: a fast symbolic method for computing <i>p</i>-values of distribution-free statistics.

Mark A. van de Wiel

Comput. Stat., 2001