K. Anton Feenstra
Orcid: 0000-0001-6755-9667Affiliations:
- Free University of Amsterdam, Netherlands
According to our database1,
K. Anton Feenstra
authored at least 34 papers
between 1999 and 2024.
Collaborative distances:
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Bibliography
2024
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph.
Bioinform., January, 2024
2022
Ten quick tips for sequence-based prediction of protein properties using machine learning.
PLoS Comput. Biol., December, 2022
Bioinform., 2022
2021
Predicting the relationships between gut microbiota and mental disorders with knowledge graphs.
Health Inf. Sci. Syst., 2021
Bioinform., 2021
2020
A framework for exhaustive modelling of genetic interaction patterns using Petri nets.
Bioinform., 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.
PLoS Comput. Biol., 2019
SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions.
Bioinform., 2019
Bioinform., 2019
2018
PLoS Comput. Biol., 2018
Training for translation between disciplines: a philosophy for life and data sciences curricula.
Bioinform., 2018
2017
Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.
Bioinform., 2017
2016
BioASF: a framework for automatically generating executable pathway models specified in BioPAX.
Bioinform., 2016
2015
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
BMC Bioinform., 2015
Proceedings of the 2015 International Conference on High Performance Computing & Simulation, 2015
2014
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins.
Bioinform., 2014
Proceedings of the Formal Methods in Macro-Biology - First International Conference, 2014
2013
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.
Bioinform., 2013
Bioinformatics and Systems Biology: bridging the gap between heterogeneous student backgrounds.
Briefings Bioinform., 2013
Proceedings of the 3rd International Workshop on Linked Science 2013, 2013
2012
Enabling grand-canonical Monte Carlo: Extending the flexibility of GROMACS through the GromPy python interface module.
J. Comput. Chem., 2012
2010
Nucleic Acids Res., 2010
2009
BMC Bioinform., 2009
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.
Bioinform., 2009
Executing multicellular differentiation: quantitative predictive modelling of <i>C.elegans</i> vulval development.
Bioinform., 2009
Proceedings of the FM 2009: Formal Methods, 2009
2008
Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
Bioinform., 2008
PRALINE<sup>TM</sup>: a strategy for improved multiple alignment of transmembrane proteins.
Bioinform., 2008
Proceedings of the Formal Methods in Systems Biology, First International Workshop, 2008
2007
Nucleic Acids Res., 2007
2006
A Feature Selection Algorithm for Detecting Subtype Specific Functional Sites from Protein Sequences for Smad Receptor Binding.
Proceedings of the Fifth International Conference on Machine Learning and Applications, 2006
1999
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.
J. Comput. Chem., 1999