José María Carazo
Orcid: 0000-0003-0788-8447Affiliations:
- National Center for Biotechnology, Spain
- Autonomous University of Madrid, Spain (former)
According to our database1,
José María Carazo
authored at least 97 papers
between 1988 and 2023.
Collaborative distances:
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Bibliography
2023
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness.
Data Sci. J., January, 2023
2022
Nucleic Acids Res., 2022
2021
2020
J. Chem. Inf. Model., 2020
2019
Int. J. High Perform. Comput. Appl., 2019
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations.
Bioinform., 2019
Validation of electron microscopy initial models via small angle X-ray scattering curves.
Bioinform., 2019
Bioinform., 2019
2017
Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view.
CoRR, 2017
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.
Bioinform., 2017
2015
Bioinform., 2015
2014
Efficient initial volume determination from electron microscopy images of single particles.
Bioinform., 2014
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
An image processing approach to the simulation of electron microscopy volumes of atomic structures.
Proceedings of the 2014 IEEE International Conference on Image Processing, 2014
2013
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs.
Bioinform., 2013
2012
Integrating human and murine anatomical gene expression data for improved comparisons.
Bioinform., 2012
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012
2010
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.
Nucleic Acids Res., 2010
BMC Bioinform., 2010
2009
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.
Nucleic Acids Res., 2009
BMC Bioinform., 2009
aGEM: an integrative system for analyzing spatial-temporal gene-expression information.
Bioinform., 2009
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
Pattern Recognit., 2008
Design and analysis of an object-oriented discrete-event simulation engine for ATM telecommunication networks.
Int. J. Simul. Process. Model., 2008
BMC Bioinform., 2008
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.
Bioinform., 2008
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library.
Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008
Flexible image registration for the identification of best fitted protein models in 3D-EM maps.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008
2007
Parallel Comput., 2007
Future Gener. Comput. Syst., 2007
2006
IEEE Signal Process. Mag., 2006
IEEE Trans. Pattern Anal. Mach. Intell., 2006
BMC Bioinform., 2006
Discovering semantic features in the literature: a foundation for building functional associations.
BMC Bioinform., 2006
Biclustering of gene expression data by non-smooth non-negative matrix factorization.
BMC Bioinform., 2006
BMC Bioinform., 2006
Ann. Oper. Res., 2006
Molecular image registration using mutual information and differential evolution optimization.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization.
Proceedings of the Computer Vision Approaches to Medical Image Analysis, 2006
2005
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction.
Pattern Recognit., 2005
J. Assoc. Inf. Sci. Technol., 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005
2004
Parallel Process. Lett., 2004
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing.
New Gener. Comput., 2004
New Gener. Comput., 2004
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing.
J. Parallel Distributed Comput., 2004
Bioinform., 2004
Proceedings of the 12th Euromicro Workshop on Parallel, 2004
2003
Bioinform., 2003
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy.
Proceedings of the 2003 International Conference on Image Processing, 2003
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography.
Proceedings of the Grid Computing, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2002
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE).
Softw. Pract. Exp., 2002
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures.
Proceedings of the High Performance Computing for Computational Science, 2002
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
Proceedings of the 16th International Conference on Pattern Recognition, 2002
Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases.
Proceedings of the Image and Video Retrieval, International Conference, 2002
2001
Pattern Recognit., 2001
2000
Int. J. Imaging Syst. Technol., 2000
Self-Organizing Networks for Mapping and Clustering Biological Macromolecules Images.
Proceedings of the Artificial Neural Networks in Medicine and Biology, 2000
1999
Nucleic Acids Res., 1999
Bayesian image restoration: Parallel implementation on a SGI origin multiprocessor.
Proceedings of the Parallel Computing: Fundamentals & Applications, 1999
Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification.
Proceedings of the Engineering Applications of Bio-Inspired Artificial Neural Networks, 1999
Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets.
Proceedings of the Engineering Applications of Bio-Inspired Artificial Neural Networks, 1999
1998
Parallel Comput., 1998
Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization.
Neural Process. Lett., 1998
Bioinform., 1998
Computational space reduction and parallelization of a new clustering approach for large groups of sequences.
Bioinform., 1998
Proceedings of the Sixth Euromicro Workshop on Parallel and Distributed Processing, 1998
Biolmage, the database of biological microscopy data.
Proceedings of the German Conference on Bioinformatics, 1998
1997
A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images.
Proceedings of the Biological and Artificial Computation: From Neuroscience to Technology, 1997
A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree.
Proceedings of the Biological and Artificial Computation: From Neuroscience to Technology, 1997
1996
Implementation and experimental evaluation of the constrained ART algorithm on a multicomputer system.
Signal Process., 1996
Pattern Recognit. Lett., 1996
1995
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data.
Comput. Appl. Biosci., 1995
1994
Signal Process., 1994
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures.
Comput. Appl. Biosci., 1994
Proceedings of the Visualization in Biomedical Computing 1994, 1994
Proceedings of the Second Euromicro Workshop on Parallel and Distributed Processing, 1994
Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures.
Proceedings of the High-Performance Computing and Networking, 1994
1993
Parallel algorithm for principal components based on Hotelling's iterative procedure.
Proceedings of the 1993 Euromicro Workshop on Parallel and Distributed Processing, 1993
1992
Signal Process., 1992
1990
Pattern Recognit. Lett., 1990
1988
3-D electron microscopy and incomplete angular coverage: a restoration scheme based on projections onto convex sets.
Proceedings of the IEEE International Conference on Acoustics, 1988