Jonathan Shapey

According to our database, Jonathan Shapey authored at least 16 papers between 2019 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency.

Jianghao Wu, Dong Guo, Lu Wang, Shuojue Yang, Yuanjie Zheng, Jonathan Shapey, Tom Vercauteren, Sotirios Bisdas, Robert Bradford, Shakeel R. Saeed, Neil Kitchen, Sébastien Ourselin, Shaoting Zhang, Guotai Wang

Neurocomputing, August, 2023

CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation.

Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren

Medical Image Anal., 2023

A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma.

Navodini Wijethilake, Steve Connor, Anna Oviedova, Rebecca Burger, Tom Vercauteren, Jonathan Shapey

CoRR, 2023

MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision.

Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.

CoRR, 2023

Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging.

Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren

Int. J. Comput. Assist. Radiol. Surg., 2023

Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing.

Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

2022

CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation.

Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren

CoRR, 2022

Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction.

Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren

Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2022

Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma.

Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey

Proceedings of the Machine Learning in Clinical Neuroimaging - 5th International Workshop, 2022

2021

Inter Extreme Points Geodesics for Weakly Supervised Segmentation.

Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren

CoRR, 2021

Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware.

Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren

Int. J. Comput. Assist. Radiol. Surg., 2021

Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation.

Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

2020

Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI.

Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren

Int. J. Comput. Assist. Radiol. Surg., 2020

Scribble-Based Domain Adaptation via Co-segmentation.

Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019

Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss.

Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Sébastien Ourselin, Tom Vercauteren

CoRR, 2019

Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss.

Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Shaoting Zhang, Sébastien Ourselin, Tom Vercauteren

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019