Jonathan A. Eisen

According to our database, Jonathan A. Eisen authored at least 11 papers between 1994 and 2015.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2015

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Stephen Nayfach, Patrick H. Bradley, Stacia K. Wyman, Timothy J. Laurent, Alexander G. Williams, Jonathan A. Eisen, Katherine S. Pollard, Thomas J. Sharpton

PLoS Comput. Biol., 2015

2012

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance.

Steven W. Kembel, Martin Wu, Jonathan A. Eisen, Jessica L. Green

PLoS Comput. Biol., 2012

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

Thomas J. Sharpton, Guillaume Jospin, Dongying Wu, Morgan G. I. Langille, Katherine S. Pollard, Jonathan A. Eisen

BMC Bioinform., 2012

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Morgan G. I. Langille, Matthew R. Laird, William W. L. Hsiao, Terry A. Chiu, Jonathan A. Eisen, Fiona S. L. Brinkman

Bioinform., 2012

2011

PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data.

Thomas J. Sharpton, Samantha J. Riesenfeld, Steven W. Kembel, Joshua Ladau, James P. O'Dwyer, Jessica L. Green, Jonathan A. Eisen, Katherine S. Pollard

PLoS Comput. Biol., 2011

Mauve Assembly Metrics.

Aaron E. Darling, Andrew J. Tritt, Jonathan A. Eisen, Marc T. Facciotti

Bioinform., 2011

2010

WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences.

Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen

BMC Bioinform., 2010

2008

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads.

Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Evolution.

Nicholas H. Barton, Derek E. G. Briggs, Jonathan A. Eisen, David B. Goldstein, Nipam H. Patel

Cold Spring Harbor Laboratory Press, ISBN: 978-0-87969-684-9, 2007

2001

TIGRFAMs: a protein family resource for the functional identification of proteins.

Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, Owen White

Nucleic Acids Res., 2001

1994

Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences.

Jonathan A. Eisen, Maria-Ines Benito, Virginia Walbot

Nucleic Acids Res., 1994