John S. Mattick

According to our database, John S. Mattick authored at least 14 papers between 2004 and 2014.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2014

Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver.

Tung T. Nguyen, John S. A. Mattick, Qian Yang, Mehmet A. Orman, Marianthi G. Ierapetritou, Francois Berthiaume, Ioannis P. Androulakis

BMC Bioinform., 2014

2013

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci.

Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey

Bioinform., 2013

2012

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

Dennis K. Gascoigne, Seth W. Cheetham, Pierre B. Cattenoz, Michael B. Clark, Paulo P. Amaral, Ryan J. Taft, Dagmar Wilhelm, Marcel E. Dinger, John S. Mattick

Bioinform., 2012

2011

lncRNAdb: a reference database for long noncoding RNAs.

Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick

Nucleic Acids Res., 2011

2009

NRED: a database of long noncoding RNA expression.

Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, Mark L. Crowe, Sean M. Grimmond, John S. Mattick

Nucleic Acids Res., 2009

2008

Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities.

Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, John S. Mattick

PLoS Comput. Biol., 2008

Delineating Slowly and Rapidly Evolving Fractions of the <i>Drosophila</i> Genome.

Jonathan M. Keith, Peter Adams, Stuart Stephen, John S. Mattick

J. Comput. Biol., 2008

2007

RNAdb 2.0 - an expanded database of mammalian non-coding RNAs.

Ken C. Pang, Stuart Stephen, Marcel E. Dinger, Pär G. Engström, Boris Lenhard, John S. Mattick

Nucleic Acids Res., 2007

2006

GONOME: measuring correlations between GO terms and genomic positions.

Stefan M. Stanley, Timothy L. Bailey, John S. Mattick

BMC Bioinform., 2006

Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks.

Jennifer Hallinan, Daniel R. Bradley, John S. Mattick, Janet Wiles

Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

2005

Inherent size constraints on prokaryote gene networks due to "accelerating" growth.

Michael J. Gagen, John S. Mattick

Theory Biosci., 2005

RNAdb - a comprehensive mammalian noncoding RNA database.

Ken C. Pang, Stuart Stephen, Pär G. Engström, Khairina Tajul-Arifin, Weisan Chen, Claes Wahlestedt, Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick

Nucleic Acids Res., 2005

There's more to a model than code: understanding and formalizing <i>in silico</i> modeling experience.

Janet Wiles, Nicholas Geard, James E. M. Watson, Kai Willadsen, John S. Mattick, Daniel R. Bradley, Jennifer Hallinan

Proceedings of the Genetic and Evolutionary Computation Conference, 2005

2004

SVMtm: Support vector machines to predict transmembrane segments.

Zheng Yuan, John S. Mattick, Rohan D. Teasdale

J. Comput. Chem., 2004