Jaak Vilo

Orcid: 0000-0001-5604-4107

According to our database1, Jaak Vilo authored at least 39 papers between 1992 and 2024.

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Bibliography

2024
Markov modeling for cost-effectiveness using federated health data network.
J. Am. Medical Informatics Assoc., 2024

2023
g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).
Nucleic Acids Res., July, 2023

2020
gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler.
F1000Research, 2020

PAWER: protein array web exploreR.
BMC Bioinform., 2020

2019
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).
Nucleic Acids Res., 2019

2016
g: Profiler - a web server for functional interpretation of gene lists (2016 update).
Nucleic Acids Res., 2016

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.
Bioinform., 2016

2015
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap.
Nucleic Acids Res., 2015

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data.
F1000Research, 2015

FUN-L: gene prioritization for RNAi screens.
Bioinform., 2015

2013
A new way to protect privacy in large-scale genome-wide association studies.
Bioinform., 2013

2012
Robust rank aggregation for gene list integration and meta-analysis.
Bioinform., 2012

Fraud Detection: Methods of Analysis for Hypergraph Data.
Proceedings of the International Conference on Advances in Social Networks Analysis and Mining, 2012

2011
g: Profiler - a web server for functional interpretation of gene lists (2011 update).
Nucleic Acids Res., 2011

Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs.
Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

2010
Information Retrieval of Word Form Variants in Spoken Language Corpora Using Generalized Edit Distance.
Proceedings of the International Conference on Language Resources and Evaluation, 2010

National Programme for Estonian Language Technology: a Pre-final Summary.
Proceedings of the Human Language Technologies - The Baltic Perspective, 2010

An Evolutionary Model of DNA Substring Distribution.
Proceedings of the Algorithms and Applications, 2010

2009
VisHiC - hierarchical functional enrichment analysis of microarray data.
Nucleic Acids Res., 2009

2008
GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
Nucleic Acids Res., 2008

KEGGanim: pathway animations for high-throughput data.
Bioinform., 2008

Fast approximate hierarchical clustering using similarity heuristics.
BioData Min., 2008

Strengthening the Estonian Language Technology.
Proceedings of the International Conference on Language Resources and Evaluation, 2008

Flexible Database Platform for Biomedical Research with Multiple User Interfaces and a Universal Query Engine.
Proceedings of the Databases and Information Systems V, 2008

2007
g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments.
Nucleic Acids Res., 2007

2004
Expression Profiler: next generation - an online platform for analysis of microarray data.
Nucleic Acids Res., 2004

2003
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Res., 2003

2002
Building and analysing genome-wide gene disruption networks.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Correlating gene promoters and expression in gene disruption experiments.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001
Prediction of the coupling specificity of G protein coupled receptors to their G proteins.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1998
Pattern Discovery in Biosequences.
Proceedings of the Grammatical Inference, 4th International Colloquium, 1998

Predicting gene regulatory elements from their expression data in the complete yeast genome.
Proceedings of the German Conference on Bioinformatics, 1998

1997
Data Mining for Regulatory Elements in Yeast Genome.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Finding transcription factor binding site combinations in the yeast genome.
Proceedings of the German Conference on Bioinformatics, 1997

1996
Discovering Patterns and Subfamilies in Biosequences.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract).
Proceedings of the Algorithms and Computation, 7th International Symposium, 1996

1994
An ALgorithm for Learning Hierarchical Classifiers.
Proceedings of the Machine Learning: ECML-94, 1994

1992
Implementing Attribute Grammars by Computational Models.
Proceedings of the Programming Language Implementation and Logic Programming, 1992


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