Elana J. Fertig

Orcid: 0000-0003-3204-342X

According to our database1, Elana J. Fertig authored at least 21 papers between 2010 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Leveraging multi-omics data to empower quantitative systems pharmacology in immuno-oncology.
Briefings Bioinform., 2024

2023
Transcriptomic forecasting with neural ordinary differential equations.
Patterns, August, 2023

2022
Ten quick tips for deep learning in biology.
PLoS Comput. Biol., 2022

Regression Expression Variation Analysis (REVA): a rank-based multi-dimensional measure of correlation.
Proceedings of the 21st IEEE International Conference on Machine Learning and Applications, 2022

2021
Ten Quick Tips for Deep Learning in Biology.
CoRR, 2021

A field guide to cultivating computational biology.
CoRR, 2021

2020
CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures.
BMC Bioinform., 2020

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.
Bioinform., 2020

2019
CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.
PLoS Comput. Biol., 2019

2018
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.
Bioinform., 2018

2017
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.
Bioinform., 2017

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.
Bioinform., 2017

2015
AGA: Interactive pipeline for reproducible genomics analyses.
F1000Research, 2015

switchBox: an R package for k-Top Scoring Pairs classifier development.
Bioinform., 2015

The estimation of dimensionality in gene expression data using Nonnegative Matrix Factorization.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.
Bioinform., 2014

2012
Quantifying the Dynamics of Coupled Networks of Switches and Oscillators.
Proceedings of the Research in Computational Molecular Biology, 2012

Matrix factorization for transcriptional regulatory network inference.
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

Identifying context-specific transcription factor targets from prior knowledge and gene expression data.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Cancer Systems Biology.
Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.
Bioinform., 2010


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