Daron M. Standley

According to our database, Daron M. Standley authored at least 18 papers between 2005 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2022

Advances in antibody discovery from human BCR repertoires.

Zichang Xu, Hendra S. Ismanto, Hao Zhou, Dianita S. Saputri, Fuminori Sugihara, Daron M. Standley

Frontiers Bioinform., 2022

2019

MAFFT-DASH: integrated protein sequence and structural alignment.

John Rozewicki, Songling Li, Karlou Mar Amada, Daron M. Standley, Kazutaka Katoh

Nucleic Acids Res., 2019

2016

A simple method to control over-alignment in the MAFFT multiple sequence alignment program.

Kazutaka Katoh, Daron M. Standley

Bioinform., 2016

2014

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies.

Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley

Bioinform., 2014

2013

A novel function prediction approach using protein overlap networks.

Shide Liang, Dandan Zheng, Daron M. Standley, Huarong Guo, Chi Zhang

BMC Syst. Biol., 2013

A Parzen window-based approach for the detection of locally enriched transcription factor binding sites.

Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley

BMC Bioinform., 2013

2012

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.

Akira R. Kinjo, Hirofumi Suzuki, Reiko Yamashita, Yasuyo Ikegawa, Takahiro Kudou, Reiko Igarashi, Yumiko Kengaku, Hasumi Cho, Daron M. Standley, Atsushi Nakagawa, Haruki Nakamura

Nucleic Acids Res., 2012

Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator.

Ashwini Patil, Shunsuke Teraguchi, Huy Dinh, Kenta Nakai, Daron M. Standley

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions.

Shide Liang, Yaoqi Zhou, Nick V. Grishin, Daron M. Standley

J. Comput. Chem., 2011

Prediction of dinucleotide-specific RNA-binding sites in proteins.

Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad

BMC Bioinform., 2011

Fast and accurate prediction of protein side-chain conformations.

Shide Liang, Dandan Zheng, Chi Zhang, Daron M. Standley

Bioinform., 2011

2010

Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins.

Shunsuke Teraguchi, Ashwini Patil, Daron M. Standley

BMC Bioinform., 2010

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results.

Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang

BMC Bioinform., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi

J. Biomed. Semant., 2010

<i>SeSAW</i>: balancing sequence and structural information in protein functional mapping.

Daron M. Standley, Reiko Yamashita, Akira R. Kinjo, Hiroyuki Toh, Haruki Nakamura

Bioinform., 2010

2008

Protein structure databases with new web services for structural biology and biomedical research.

Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura

Briefings Bioinform., 2008

2007

ASH structure alignment package: Sensitivity and selectivity in domain classification.

Daron M. Standley, Hiroyuki Toh, Haruki Nakamura

BMC Bioinform., 2007

2005

GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures.

Daron M. Standley, Hiroyuki Toh, Haruki Nakamura

BMC Bioinform., 2005