Chiara Pastrello

Orcid: 0000-0002-1934-7472

According to our database1, Chiara Pastrello authored at least 23 papers between 2013 and 2023.

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Bibliography

2023
<i>USNAP</i>: fast unique dense region detection and its application to lung cancer.
Bioinform., August, 2023

MirDIP 5.2: tissue context annotation and novel microRNA curation.
Nucleic Acids Res., January, 2023

2022
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.
Nucleic Acids Res., 2022

miRAnno - network-based functional microRNA annotation.
Bioinform., 2022

Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture.
Briefings Bioinform., 2022

2021
Comprehensive pathway enrichment analysis workflows: COVID-19 case study.
Briefings Bioinform., 2021

2020
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).
Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Nucleic Acids Res., 2020

GSOAP: a tool for visualization of gene set over-representation analysis.
Bioinform., 2020

BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Bioinform., 2020

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation, 2020

2019
Two Decades of Biological Pathway Databases: Results and Challenges.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Protein-Protein Interaction Databases.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Visualization of Biomedical Networks.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.
Nucleic Acids Res., 2019

2018
mirDIP 4.1 - integrative database of human microRNA target predictions.
Nucleic Acids Res., 2018

SDREGION: Fast Spotting of Changing Communities in Biological Networks.
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2018

2017
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.
Nucleic Acids Res., 2017

2016
Integrated interactions database: tissue-specific view of the human and model organism interactomes.
Nucleic Acids Res., 2016

Robust quantitative scratch assay.
Bioinform., 2016

2015
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
PLoS Comput. Biol., 2015

2014
Visual Data Mining: Effective Exploration of the Biological Universe.
Proceedings of the Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014

2013
Visual Data Mining of Biological Networks: One Size Does Not Fit All.
PLoS Comput. Biol., 2013


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