Cezary Czaplewski

Orcid: 0000-0002-0294-3403

According to our database1, Cezary Czaplewski authored at least 24 papers between 1997 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of five.

Timeline

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Bibliography

2024
Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures.
J. Chem. Inf. Model., February, 2024

Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems.
Comput. Phys. Commun., 2024

2023
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins.
J. Comput. Chem., February, 2023

Long-time scale simulations of virus-like particles from three human-norovirus strains.
J. Comput. Chem., 2023

2021
UNRES-Dock - protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.
Bioinform., 2021

2020
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.
J. Chem. Inf. Model., 2020

2018
High Performance Computing with Coarse Grained Model of Biological Macromolecules.
Supercomput. Front. Innov., 2018

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.
Nucleic Acids Res., 2018

2017
Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.
J. Comput. Chem., 2017

2016
Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.
J. Chem. Inf. Model., 2016

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
Bioinform., 2016

2015
A Maximum-Likelihood Approach to Force-Field Calibration.
J. Chem. Inf. Model., 2015

Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field.
J. Chem. Inf. Model., 2015

2010
Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2006
A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low-Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United-Residue Force Field.
Multiscale Model. Simul., 2006

Meta-computations on the CLUSTERIX Grid.
Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

2005
Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.
J. Comput. Chem., 2005

An efficient molecular docking using conformational space annealing.
J. Comput. Chem., 2005

2002
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins.
J. Comput. Chem., 2002

2000
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999
Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectories.
J. Comput. Aided Mol. Des., 1999

1998
United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials.
J. Comput. Chem., 1998

Molecular modeling of the human vasopressin V2 receptor/agonist complex.
J. Comput. Aided Mol. Des., 1998

1997
Molecular modeling of the neurophysin I/oxytocin complex.
J. Comput. Aided Mol. Des., 1997


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