Bo Liu

Affiliations:
  • Harbin Institute of Technology, School of Computer Sciences and Technology, Center for Bioinformatics, Harbin, China


According to our database1, Bo Liu authored at least 37 papers between 2012 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Online presence:

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Bibliography

2023
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information.
Bioinform., October, 2023

Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022
Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection.
Comput. Biol. Chem., 2022

2021
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering.
Comput. Biol. Chem., 2021

Fast and SNP-aware short read alignment with SALT.
BMC Bioinform., 2021

IIMLP: integrated information-entropy-based method for LncRNA prediction.
BMC Bioinform., 2021

Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction.
BMC Bioinform., 2021

SKSV: ultrafast structural variation detection from circular consensus sequencing reads.
Bioinform., 2021

Erratum to: abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinform., 2021

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band.
Bioinform., 2021

ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding.
Proceedings of the Intelligent Computing Theories and Application, 2021

2020
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network.
Comput. Biol. Chem., 2020

GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Fast read alignment with incorporation of known genomic variants.
BMC Medical Informatics Decis. Mak., 2019

Integrated entropy-based approach for analyzing exons and introns in DNA sequences.
BMC Bioinform., 2019

rMETL: sensitive mobile element insertion detection with long read realignment.
Bioinform., 2019

TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain.
Bioinform., 2019

Prediction of Human LncRNAs Based on Integrated Information Entropy Features.
Proceedings of the Intelligent Computing Theories and Application, 2019

A Bidirectional Fuzzy Index and Approximate Search Algorithm for Next Generation Sequencing.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

SALT: a fast, memory-efficient and SNP-aware short read alignment tool.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Fast variation-aware read alignment with deBGA-VARA.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexing.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

rCANID: read Clustering and Assembly-based Novel Insertion Detection tool.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Accurate annotation of metagenomic data without species-level references.
Int. J. Data Min. Bioinform., 2017

rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Bioinform., 2017

LAMSA: fast split read alignment with long approximate matches.
Bioinform., 2017

2016
deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encoding.
Bioinform., 2016

rHAT: fast alignment of noisy long reads with regional hashing.
Bioinform., 2016

deBGA: read alignment with de Bruijn graph-based seed and extension.
Bioinform., 2016

2015
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads.
BMC Bioinform., 2015

2013
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
A differentor-based adaptive ontology-matching approach.
J. Inf. Sci., 2012


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