Arne Elofsson

Orcid: 0000-0002-7115-9751

Affiliations:
  • Stockholm University, Sweden


According to our database1, Arne Elofsson authored at least 56 papers between 1999 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings.
Bioinform., January, 2024

Opportunities for machine learning in scientific discovery.
CoRR, 2024

Stable Autonomous Flow Matching.
CoRR, 2024

2023
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network.
Bioinform., February, 2023

2022
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Nucleic Acids Res., 2022

Limits and potential of combined folding and docking.
Bioinform., 2022

2021
The evolutionary history of topological variations in the CPA/AT transporters.
PLoS Comput. Biol., 2021

GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction.
PLoS Comput. Biol., 2021

Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families.
PLoS Comput. Biol., 2021

Toward Characterising the Cellular 3D-Proteome.
Frontiers Bioinform., 2021

Protein sequence-to-structure learning: Is this the end(-to-end revolution)?
CoRR, 2021

pyconsFold: a fast and easy tool for modeling and docking using distance predictions.
Bioinform., 2021

GraphQA: protein model quality assessment using graph convolutional networks.
Bioinform., 2021

2020
DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res., 2020

TransformerCPI: improving compound-protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments.
Bioinform., 2020

2019
Ten simple rules on how to create open access and reproducible molecular simulations of biological systems.
PLoS Comput. Biol., 2019

Why do eukaryotic proteins contain more intrinsically disordered regions?
PLoS Comput. Biol., 2019

PconsC4: fast, accurate and hassle-free contact predictions.
Bioinform., 2019

2017
High GC content causes orphan proteins to be intrinsically disordered.
PLoS Comput. Biol., 2017

DisProt 7.0: a major update of the database of disordered proteins.
Nucleic Acids Res., 2017

ProQ3D: improved model quality assessments using deep learning.
Bioinform., 2017

SubCons: a new ensemble method for improved human subcellular localization predictions.
Bioinform., 2017

Predicting accurate contacts in thousands of Pfam domain families using PconsC3.
Bioinform., 2017

Large-scale structure prediction by improved contact predictions and model quality assessment.
Bioinform., 2017

GWAR: robust analysis and meta-analysis of genome-wide association studies.
Bioinform., 2017

2016
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins.
Bioinform., 2016

Improved topology prediction using the terminal hydrophobic helices rule.
Bioinform., 2016

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.
Bioinform., 2016

2015
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.
Nucleic Acids Res., 2015

2014
Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns.
PLoS Comput. Biol., 2014

PconsFold: improved contact predictions improve protein models.
Bioinform., 2014

2013
PconsD: ultra rapid, accurate model quality assessment for protein structure prediction.
Bioinform., 2013

PconsC: combination of direct information methods and alignments improves contact prediction.
Bioinform., 2013

2012
Ranking models of transmembrane <i>β</i>-barrel proteins using Z-coordinate predictions.
Bioinform., 2012

BOCTOPUS: improved topology prediction of transmembrane β barrel proteins.
Bioinform., 2012

2011
KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2.
Bioinform., 2011

Improved predictions by Pcons.net using multiple templates.
Bioinform., 2011

Rapid membrane protein topology prediction.
Bioinform., 2011

2010
MPRAP: An accessibility predictor for alpha-helical transmembrane proteins that performs well inside and outside the membrane.
BMC Bioinform., 2010

2009
TOPCONS: consensus prediction of membrane protein topology.
Nucleic Acids Res., 2009

2008
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
Bioinform., 2008

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
Bioinform., 2008

2007
Pcons.net: protein structure prediction meta server.
Nucleic Acids Res., 2007

2006
Expansion of Protein Domain Repeats.
PLoS Comput. Biol., 2006

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.
Nucleic Acids Res., 2006

Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps.
BMC Bioinform., 2006

ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins.
BMC Bioinform., 2005

Pcons5: combining consensus, structural evaluation and fold recognition scores.
Bioinform., 2005

2003
3D-Jury: A Simple Approach to Improve Protein Structure Predictions.
Bioinform., 2003

2002
Prediction of MHC class I binding peptides, using SVMHC.
BMC Bioinform., 2002

2001
A study of quality measures for protein threading models.
BMC Bioinform., 2001

Structure prediction meta server.
Bioinform., 2001

Side Chain-Positioning as an Integer Programming Problem.
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

2000
MaxSub: an automated measure for the assessment of protein structure prediction quality.
Bioinform., 2000

1999
A comparison of sequence and structure protein domain families as a basis for structural genomics.
Bioinform., 1999


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