Alexis A. Rodriguez

According to our database, Alexis A. Rodriguez authored at least 19 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2024

MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline.

Lanya T. Cai, Joseph Y. Moon, Paul B. Camacho, Aaron T. Anderson, Won Jong Chwa, Bradley P. Sutton, Amy J. Markowitz, Eva M. Palacios, Alexis A. Rodriguez, Geoffrey T. Manley, Shivsundaram Shankar, Peer-Timo Bremer, Pratik Mukherjee, Ravi K. Madduri, Shankar Gopinath, Ramesh Grandhi, C. Dirk Keene, Michael A. McCrea, Randall Merchant, Laura B. Ngwenya, Ava M. Puccio, David Schnyer, Sabrina R. Taylor, John K. Yue, Esther L. Yuh, Ross Zafonte

Neuroinformatics, April, 2024

2018

Reproducible big data science: A case study in continuous FAIRness.

Ravi K. Madduri, Kyle Chard, Michel D'Arcy, Segun Jung, Alexis A. Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory C. Funk, Benjamin D. Heavner, Matthew A. Richards, Paul Shannon, Gustavo Glusman, Nathan D. Price, Carl Kesselman, Ian T. Foster

Proceedings of Workshop on Research Objects (RO2018), 2018

2016

An Automated Tool Profiling Service for the Cloud.

Ryan Chard, Kyle Chard, Bryan Ng, Kris Bubendorfer, Alex A. Rodriguez, Ravi K. Madduri, Ian T. Foster

Proceedings of the IEEE/ACM 16th International Symposium on Cluster, 2016

I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets.

Kyle Chard, Mike D'Arcy, Benjamin D. Heavner, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Alexis A. Rodriguez, Stian Soiland-Reyes, Carole A. Goble, Kristi Clark, Eric W. Deutsch, Ivo D. Dinov, Nathan D. Price, Arthur W. Toga

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2015

PDACS: A Portal for Data Analysis Services for Cosmological Simulations.

Ravi K. Madduri, Alex A. Rodriguez, Thomas D. Uram, Katrin Heitmann, Tanu Malik, Saba Sehrish, Ryan Chard, Shreyas Cholia, Marc F. Paterno, Jim Kowalkowski, Salman Habib

Comput. Sci. Eng., 2015

The Globus Galaxies platform: delivering science gateways as a service.

Ravi K. Madduri, Kyle Chard, Ryan Chard, Lukasz Lacinski, Alex A. Rodriguez, Dinanath Sulakhe, David Kelly, Utpal J. Dave, Ian T. Foster

Concurr. Comput. Pract. Exp., 2015

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.

Vassily Trubetskoy, Alex A. Rodriguez, Uptal J. Dave, Nicholas Campbell, Emily L. Crawford, Edwin H. Cook Jr., James S. Sutcliffe, Ian T. Foster, Ravi K. Madduri, Nancy J. Cox, Lea K. Davis

Bioinform., 2015

2014

Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services.

Ravi K. Madduri, Dinanath Sulakhe, Lukasz Lacinski, Bo Liu, Alex A. Rodriguez, Kyle Chard, Utpal J. Dave, Ian T. Foster

Concurr. Comput. Pract. Exp., 2014

PDACS: a portal for data analysis services for cosmological simulations.

Ryan Chard, Saba Sehrish, Alex A. Rodriguez, Ravi K. Madduri, Thomas D. Uram, Marc F. Paterno, Katrin Heitmann, Shreyas Cholia, Jim Kowalkowski, Salman Habib

Proceedings of the 9th Gateway Computing Environments Workshop, 2014

2013

Distributed tools deployment and management for multiple galaxy instances in globus genomics.

Dinanath Sulakhe, Alex A. Rodriguez, Nick Prozorovsky, Nilesh Kavthekar, Ravi K. Madduri, Amol Parikh, Paul Dave, Lukasz Lacinski, Ian T. Foster

Proceedings of WORKS 2013: 8th Workshop On Workflows in Support of Large-Scale Science, 2013

Enabling multi-task computation on Galaxy-based gateways using swift.

Ketan Maheshwari, Alex A. Rodriguez, David Kelly, Ravi K. Madduri, Justin M. Wozniak, Michael Wilde, Ian T. Foster

Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013

2008

Interoperability of GADU in Using Heterogeneous Grid Resources for Bioinformatics Applications.

Dinanath Sulakhe, Alex A. Rodriguez, Michael Wilde, Ian T. Foster, Natalia Maltsev

IEEE Trans. Inf. Technol. Biomed., 2008

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards

BMC Bioinform., 2008

2007

Sentra: a database of signal transduction proteins for comparative genome analysis.

Mark D'Souza, Elizabeth M. Glass, Mustafa H. Syed, Yi Zhang, Alexis A. Rodriguez, Natalia Maltsev, Michael Y. Galperin

Nucleic Acids Res., 2007

Evolutionary analysis of enzymes using Chisel.

Alexis A. Rodriguez, Tanuja Bompada, Mustafa H. Syed, Parantu K. Shah, Natalia Maltsev

Bioinform., 2007

2006

PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways.

Natalia Maltsev, Elizabeth M. Glass, Dinanath Sulakhe, Alexis A. Rodriguez, Mustafa H. Syed, Tanuja Bompada, Yi Zhang, Mark D'Souza

Nucleic Acids Res., 2006

Using Multiple Grid Resources for Bioinformatics Applications in GADU.

Dinanath Sulakhe, Alex A. Rodriguez, Michael Wilde, Ian T. Foster, Natalia Maltsev

Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 2006

2005

GNARE: an environment for grid-based high-throughput genome analysis.

Dinanath Sulakhe, Alex A. Rodriguez, Mark D'Souza, Michael Wilde, Veronika Nefedova, Ian T. Foster, Natalia Maltsev

Proceedings of the 5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 2005

2004

The Grid2003 Production Grid: Principles and Practice.

Ian T. Foster, Jerry Gieraltowski, Scott Gose, Natalia Maltsev, Edward N. May, Alex A. Rodriguez, Dinanath Sulakhe, A. Vaniachine, Jim Shank, Saul Youssef, David Adams, Richard Baker, Wensheng Deng, Jason Smith, Dantong Yu, Iosif Legrand, Suresh Singh, Conrad Steenberg, Yang Xia, M. Anzar Afaq, Eileen Berman, James Annis, L. A. T. Bauerdick, Michael Ernst, Ian Fisk, Lisa Giacchetti, Gregory E. Graham, Anne Heavey, Joseph Kaiser, Nickolai Kuropatkin, Ruth Pordes, Vijay Sekhri, John Weigand, Yujun Wu, Keith Baker, Lawrence Sorrillo, John Huth, Matthew Allen, Leigh Grundhoefer, John Hicks, Fred Luehring, Steve Peck, Robert Quick, Stephen C. Simms, George Fekete, Jan vandenBerg, Kihyeon Cho, Kihwan Kwon, Dongchul Son, Hyoungwoo Park, Shane Canon, Keith R. Jackson, David E. Konerding, Jason Lee, Doug Olson, Iwona Sakrejda, Brian Tierney, Mark Green, Russ Miller, James Letts, Terrence Martin, David Bury, Catalin Dumitrescu, Daniel Engh, Robert W. Gardner, Marco Mambelli, Yuri Smirnov, Jens-S. Vöckler, Michael Wilde, Yong Zhao, Xin Zhao, Paul Avery, Richard Cavanaugh, Bockjoo Kim, Craig Prescott, Jorge Luis Rodriguez, Andrew Zahn, Shawn McKee, Christopher T. Jordan, James E. Prewett, Timothy L. Thomas, Horst Severini, Ben Clifford, Ewa Deelman, Larry Flon, Carl Kesselman, Gaurang Mehta, Nosa Olomu, Karan Vahi, Kaushik De, Patrick McGuigan, Mark Sosebee, Dan Bradley, Peter Couvares, Alan DeSmet, Carey Kireyev, Erik Paulson, Alain Roy, Scott Koranda, Brian Moe, Bobby Brown, Paul Sheldon

Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004