Alexej Abyzov

According to our database, Alexej Abyzov authored at least 16 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.

Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov

PLoS Comput. Biol., November, 2022

All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.

Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov

PLoS Comput. Biol., 2022

OpBerg: Discovering Causal Sentences Using Optimal Alignments.

Justin Wood, Nicholas J. Matiasz, Alcino J. Silva, William Hsu, Alexej Abyzov, Wei Wang

Proceedings of the Big Data Analytics and Knowledge Discovery, 2022

2021

LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads.

Quang Tran, Alexej Abyzov

Bioinform., 2021

2020

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.

Vivekananda Sarangi, Alexandre Jourdon, Taejeong Bae, Arijit Panda, Flora Vaccarino, Alexej Abyzov

BMC Bioinform., 2020

2017

Landscape and variation of novel retroduplications in 26 human populations.

Yan Zhang, Shantao Li, Alexej Abyzov, Mark B. Gerstein

PLoS Comput. Biol., 2017

2015

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.

John C. Mu, Marghoob Mohiyuddin, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam

Bioinform., 2015

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.

Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam

Bioinform., 2015

2011

AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision.

Alexej Abyzov, Mark Gerstein

Bioinform., 2011

2010

Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.

Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein

PLoS Comput. Biol., 2010

2008

An AP Endonuclease 1-DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces.

Alexej Abyzov, Alper Uzun, Phyllis R. Strauss, Valentin A. Ilyin

PLoS Comput. Biol., 2008

2007

Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.

Alper Uzun, Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin

Nucleic Acids Res., 2007

TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method.

Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin

Nucleic Acids Res., 2007

2005

Active Site Prediction for Comparative Model Structures with Thematics.

Ihsan A. Shehadi, Alexej Abyzov, Alper Uzun, Ying Wei, Leonel F. Murga, Valentin A. Ilyin, Mary Jo Ondrechen

J. Bioinform. Comput. Biol., 2005

Friend, an integrated analytical front-end application for bioinformatics.

Alexej Abyzov, Mounir Errami, Chesley M. Leslin, Valentin A. Ilyin

Bioinform., 2005

2004

Structural exon database, SEDB, mapping exon boundaries on multiple protein structures.

Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin

Bioinform., 2004