Zongliang Yue

According to our database, Zongliang Yue authored at least 19 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis.

Fengyuan Huang, Robert S. Welner, Jake Y. Chen, Zongliang Yue

Frontiers Bioinform., 2024

Integrating Artificial Open Generative Artificial Intelligence into Software Supply Chain Security.

Vasileios Alevizos, George A. Papakostas, Akebu Simasiku, Dimitra Malliarou, Antonis Messinis, Sabrina Edralin, Clark Xu, Zongliang Yue

CoRR, 2024

Logarithmic Positional Partition Interval Encoding.

Vasileios Alevizos, Nikitas Gerolimos, Sabrina Edralin, Clark Xu, Akebu Simasiku, Georgios Priniotakis, George A. Papakostas, Zongliang Yue

CoRR, 2024

2022

WINNER: A network biology tool for biomolecular characterization and prioritization.

Thanh Nguyen, Zongliang Yue, Radomir Slominski, Robert S. Welner, Jianyi Zhang, Jake Y. Chen

Frontiers Big Data, 2022

DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features.

Zhenyu Weng, Zongliang Yue, Yuesheng Zhu, Jake Yue Chen

Bioinform., 2022

2021

PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.

Zongliang Yue, Eric Zhang, Clark Xu, Sunny Khurana, Nishant Batra, Son Do Hai Dang, James J. Cimino, Jake Y. Chen

Nucleic Acids Res., 2021

Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.

Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen

Frontiers Big Data, 2021

Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.

Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen

Frontiers Big Data, 2021

PAGER-CoV-Run: An online interactive analytical platform for COVID-19 functional genomic downstream analysis.

Zongliang Yue, Nishant Batra, Hui-Chen Hsu, John Mountz, Jake Y. Chen

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2019

WIPER: Weighted in-Path Edge Ranking for biomolecular association networks.

Zongliang Yue, Thanh Nguyen, Eric Zhang, Jianyi Zhang, Jake Y. Chen

Quant. Biol., 2019

BEERE: a web server for biomedical entity expansion, ranking and explorations.

Zongliang Yue, Christopher D. Willey, Anita B. Hjelmeland, Jake Y. Chen

Nucleic Acids Res., 2019

2018

"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data.

Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, Jake Y. Chen

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.

Zongliang Yue, Qi Zheng, Michael T. Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, Jake Y. Chen

Nucleic Acids Res., 2018

2017

Repositioning drugs by targeting network modules: a Parkinson's disease case study.

Zongliang Yue, Itika Arora, Eric Y. Zhang, Vincent Laufer, S. Louis Bridges, Jake Y. Chen

BMC Bioinform., 2017

2016

Towards constructing "Super Gene Sets" regulatory networks.

Jake Y. Chen, Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Nafisa Bulsara, Itika Arora, Timothy Ratliff

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

DMAP: a connectivity map database to enable identification of novel drug repositioning candidates.

Hui Huang, Thanh Nguyen, Sara Ibrahim, Sandeep Shantharam, Zongliang Yue, Jake Y. Chen

BMC Bioinform., December, 2015

PAGER: constructing PAGs and new PAG-PAG relationships for network biology.

Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Yue Chen

Bioinform., 2015

2014

SLDR: a computational technique to identify novel genetic regulatory relationships.

Zongliang Yue, Ping Wan, Hui Huang, Zhan Xie, Jake Yue Chen

BMC Bioinform., 2014

Computational Identification of De-Centric Genetic Regulatory Relationships from Functional Genomic Data.

Zongliang Yue, Ping Wan, Zhan Xie, Jake Y. Chen

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014