Zhiyong Liu

Orcid: 0000-0001-8257-4347

Affiliations:
  • Chinese Academy of Sciences, Institute of Computing Technology, State Key Laboratory for Computer Architecture, Beijing, China


According to our database1, Zhiyong Liu authored at least 139 papers between 1996 and 2022.

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Bibliography

2022
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms.
Comput. Methods Programs Biomed., 2022

2021
PEFS: AI-Driven Prediction Based Energy-Aware Fault-Tolerant Scheduling Scheme for Cloud Data Center.
IEEE Trans. Sustain. Comput., 2021

Classification-Based and Energy-Efficient Dynamic Task Scheduling Scheme for Virtualized Cloud Data Center.
IEEE Trans. Cloud Comput., 2021

Improve the Resolution and Parallel Performance of the Three-Dimensional Refine Algorithm in RELION Using CUDA and MPI.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

A joint energy efficiency optimization scheme based on marginal cost and workload prediction in data centers.
Sustain. Comput. Informatics Syst., 2021

Improving energy efficiency in colocation data centers for demand response.
Sustain. Comput. Informatics Syst., 2021

Multi-labelled proteins recognition for high-throughput microscopy images using deep convolutional neural networks.
BMC Bioinform., 2021

A new meta-heuristic task scheduling algorithm for optimizing energy efficiency in data centers.
Proceedings of the 2021 IEEE Intl Conf on Parallel & Distributed Processing with Applications, Big Data & Cloud Computing, Sustainable Computing & Communications, Social Computing & Networking (ISPA/BDCloud/SocialCom/SustainCom), New York City, NY, USA, September 30, 2021

A Multi-GPU Design for Large Size Cryo-EM 3D Reconstruction.
Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

A Deep Reinforcement Learning-based Task Scheduling Algorithm for Energy Efficiency in Data Centers.
Proceedings of the 30th International Conference on Computer Communications and Networks, 2021

2020
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography.
J. Comput. Biol., 2020

Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography.
BMC Bioinform., 2020

An Incentive Mechanism for Improving Energy Efficiency of Colocation Data Centers Based on Power Prediction.
Proceedings of the IEEE Symposium on Computers and Communications, 2020

Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

PStream: Priority-Based Stream Scheduling for Heterogeneous Paths in Multipath-QUIC.
Proceedings of the 29th International Conference on Computer Communications and Networks, 2020

An Energy Saving-Oriented Incentive Mechanism in Colocation Data Centers.
Proceedings of the 29th International Conference on Computer Communications and Networks, 2020

PriorityBucket: A Multipath-QUIC Scheduler on Accelerating First Rendering Time in Page Loading.
Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Eco-friendly Dynamic Task Scheduling for Regional Data Center.
Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Energy Efficient Scheduling Based on Marginal Cost and Task Grouping in Data Centers.
Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

Jointly Optimizing the IT and Cooling Systems for Data Center Energy Efficiency based on Multi-Agent Deep Reinforcement Learning.
Proceedings of the e-Energy '20: The Eleventh ACM International Conference on Future Energy Systems, 2020

2019
Quick-and-Dirty: An Architecture for High-Performance Temporary Short Writes in MLC PCM.
IEEE Trans. Computers, 2019

A market-oriented incentive mechanism for emergency demand response in colocation data centers.
Sustain. Comput. Informatics Syst., 2019

Energy-Aware Fault-Tolerant Dynamic Task Scheduling Scheme for Virtualized Cloud Data Centers.
Mob. Networks Appl., 2019

Preface.
J. Comput. Sci. Technol., 2019

PABO: Mitigating congestion via packet bounce in data center networks.
Comput. Commun., 2019

PIXER: an automated particle-selection method based on segmentation using a deep neural network.
BMC Bioinform., 2019

AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction.
Bioinform., 2019

CSCC: Convolution Split Compression Calculation Algorithm for Deep Neural Network.
IEEE Access, 2019

DM-SIRT: A Distributed Method for Multi-tilt Reconstruction in Electron Tomography.
Proceedings of the Bioinformatics Research and Applications - 15th International Symposium, 2019

FStream: Flexible Stream Scheduling and Prioritizing in Multipath-QUIC.
Proceedings of the 25th IEEE International Conference on Parallel and Distributed Systems, 2019

Balancing Performance and Energy Efficiency of ONoC by Using Adaptive Bandwidth.
Proceedings of the 37th IEEE International Conference on Computer Design, 2019

2018
Efficient Dynamic Evolution of Service Composition.
IEEE Trans. Serv. Comput., 2018

ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer.
J. Comput. Biol., 2018

SegET: Deep Neural Network with Rich Contextual Features for Cellular Structures Segmentation in Electron Tomography Image.
CoRR, 2018

PABO: A Link-Layer Congestion Mitigation Mechanism Based on Packet Bounce.
CoRR, 2018

A Novel Data Reuse Method to Reduce Demand on Memory Bandwidth and Power Consumption For True Motion Estimation.
IEEE Access, 2018

Memory-Efficient and Stabilizing Management System and Parallel Methods for RELION Using CUDA and MPI.
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

Energy-aware Fault-tolerant Scheduling Scheme based on Intelligent Prediction Model for Cloud Data Center.
Proceedings of the Ninth International Green and Sustainable Computing Conference, 2018

Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Towards the Tradeoffs in Designing Data Center Network Architectures.
IEEE Trans. Parallel Distributed Syst., 2017

Joint Optimization of Operational Cost and Performance Interference in Cloud Data Centers.
IEEE Trans. Cloud Comput., 2017

A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Hardness of Routing for Minimizing Superlinear Polynomial Cost in Directed Graphs.
Proceedings of the Theory and Applications of Models of Computation, 2017

Real-time Task Scheduling for joint energy efficiency optimization in data centers.
Proceedings of the 2017 IEEE Symposium on Computers and Communications, 2017

Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Resource optimization for survivable embedding of virtual clusters in cloud data centers.
Proceedings of the 36th IEEE International Performance Computing and Communications Conference, 2017

Online Flow Scheduling with Deadline for Energy Conservation in Data Center Networks.
Proceedings of the 23rd IEEE International Conference on Parallel and Distributed Systems, 2017

Cost Reduction in Hybrid Clouds for Enterprise Computing.
Proceedings of the 37th IEEE International Conference on Distributed Computing Systems Workshops, 2017

Quick-and-Dirty: Improving Performance of MLC PCM by Using Temporary Short Writes.
Proceedings of the 2017 IEEE International Conference on Computer Design, 2017

PABO: Congestion mitigation via packet bounce.
Proceedings of the IEEE International Conference on Communications, 2017

Balancing Performance and Lifetime of MLC PCM by Using a Region Retention Monitor.
Proceedings of the 2017 IEEE International Symposium on High Performance Computer Architecture, 2017

Energy efficiency in colocation data centers: A joint incentive mechanism approach.
Proceedings of the Eighth International Green and Sustainable Computing Conference, 2017

Joint Optimization of Server and Network Resource Utilization in Cloud Data Centers.
Proceedings of the 2017 IEEE Global Communications Conference, 2017

2016
HDEER: A Distributed Routing Scheme for Energy-Efficient Networking.
IEEE J. Sel. Areas Commun., 2016

Green Data Centers: A Survey, Perspectives, and Future Directions.
CoRR, 2016

COMRANCE: A rapid method for Network-on-Chip design space exploration.
Proceedings of the Seventh International Green and Sustainable Computing Conference, 2016

2015
Randomized oblivious integral routing for minimizing power cost.
Theor. Comput. Sci., 2015

High-Performance Motion Estimation for Image Sensors with Video Compression.
Sensors, 2015

Scheduling for energy minimization on restricted parallel processors.
J. Parallel Distributed Comput., 2015

Multi-resource Energy-efficient Routing in Cloud Data Centers with Networks-as-a-Service.
CoRR, 2015

Multi-resource energy-efficient routing in cloud data centers with network-as-a-service.
Proceedings of the 2015 IEEE Symposium on Computers and Communication, 2015

Decoupling Contention with Victim Row-Buffer on Multicore Memory Systems.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

Dual-centric Data Center Network Architectures.
Proceedings of the 44th International Conference on Parallel Processing, 2015

Truthful Strategy and Resource Integration for Multi-tenant Data Center Demand Response.
Proceedings of the Frontiers in Algorithmics - 9th International Workshop, 2015

2014
Top K Query for QoS-Aware Automatic Service Composition.
IEEE Trans. Serv. Comput., 2014

CRANarch: A feasible processor micro-architecture for Cloud Radio Access Network.
Microprocess. Microsystems, 2014

GreenDCN: A General Framework for Achieving Energy Efficiency in Data Center Networks.
IEEE J. Sel. Areas Commun., 2014

Preface.
J. Comput. Sci. Technol., 2014

OS4M: Achieving Global Load Balance of MapReduce Workload by Scheduling at the Operation Level.
CoRR, 2014

Improving the Load Balance of MapReduce Operations based on the Key Distribution of Pairs.
CoRR, 2014

DEER: A distributed routing scheme for achieving network energy efficiency.
Proceedings of the 20th IEEE International Workshop on Local & Metropolitan Area Networks, 2014

A Parallel Scheme for Three-Dimensional Reconstruction in Large-Field Electron Tomography.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

Joint power optimization through VM placement and flow scheduling in data centers.
Proceedings of the IEEE 33rd International Performance Computing and Communications Conference, 2014

Discovering Diversity Corrections for Incompatible Web Services.
Proceedings of the 2014 IEEE International Conference on Web Services, 2014

Polylogarithmic Competitive Algorithm for Energy Minimization in Optical WDM Networks.
Proceedings of the 22nd IEEE International Conference on Network Protocols, 2014

Energy-Efficient Flow Scheduling and Routing with Hard Deadlines in Data Center Networks.
Proceedings of the IEEE 34th International Conference on Distributed Computing Systems, 2014

Oblivious Integral Routing for Minimizing the Quadratic Polynomial Cost.
Proceedings of the Frontiers in Algorithmics - 8th International Workshop, 2014

2013
Joint virtual machine assignment and traffic engineering for green data center networks.
SIGMETRICS Perform. Evaluation Rev., 2013

A hop-by-hop energy efficient distributed routing scheme.
SIGMETRICS Perform. Evaluation Rev., 2013

Iterative Methods in Large Field Electron Microscope Tomography.
SIAM J. Sci. Comput., 2013

A General Framework for Achieving Energy Efficiency in Data Center Networks
CoRR, 2013

Routing for Energy Minimization with Discrete Cost Functions
CoRR, 2013

A fast calculation strategy of density function in ISAF reconstruction algorithm.
Sci. China Inf. Sci., 2013

A Path-Adaptive Opto-electronic Hybrid NoC for Chip Multi-processor.
Proceedings of the 12th IEEE International Conference on Trust, 2013

Energy-Performance Modeling and Optimization of Parallel Computing in On-Chip Networks.
Proceedings of the 12th IEEE International Conference on Trust, 2013

HRUL: A Hardware Assisted Recorder for User-Level Application.
Proceedings of the International Conference on Parallel and Distributed Computing, 2013

Incorporating Rate Adaptation Into Green Networking for Future Data Centers.
Proceedings of the 2013 IEEE 12th International Symposium on Network Computing and Applications, 2013

A Universally Stable and Energy-Efficient Scheduling Protocol for Packet Switching Network.
Proceedings of the 2013 IEEE 12th International Symposium on Network Computing and Applications, 2013

Discrete Min-Energy Scheduling on Restricted Parallel Processors.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Improving the Network Energy Efficiency in MapReduce Systems.
Proceedings of the 22nd International Conference on Computer Communication and Networks, 2013

Low Execution Efficiency: When General Multi-core Processor Meets Wireless Communication Protocol.
Proceedings of the 10th IEEE International Conference on High Performance Computing and Communications & 2013 IEEE International Conference on Embedded and Ubiquitous Computing, 2013

Risk management for virtual machines consolidation in data centers.
Proceedings of the 2013 IEEE Global Communications Conference, 2013

Energy-Efficient Scheduling with Time and Processors Eligibility Restrictions.
Proceedings of the Euro-Par 2013 Parallel Processing, 2013

Identifying Semantic-Related Search Tasks in Query Log.
Proceedings of the Web Technologies and Applications - 15th Asia-Pacific Web Conference, 2013

2012
An effective approximation algorithm for the Malleable Parallel Task Scheduling problem.
J. Parallel Distributed Comput., 2012

An Accelerated ISAF Algorithm with the Fast Mapping Strategy.
J. Comput., 2012

High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs.
BMC Bioinform., 2012

Energy-Efficient Network Routing with Discrete Cost Functions.
Proceedings of the Theory and Applications of Models of Computation, 2012

Optimizing Sparse Matrix Vector Multiplication Using Cache Blocking Method on Fermi GPU.
Proceedings of the 13th ACIS International Conference on Software Engineering, 2012

Continuous Query for QoS-Aware Automatic Service Composition.
Proceedings of the 2012 IEEE 19th International Conference on Web Services, 2012

Auto-Tuning GEMV on Many-Core GPU.
Proceedings of the 18th IEEE International Conference on Parallel and Distributed Systems, 2012

Libvmi: A Library for Bridging the Semantic Gap between Guest OS and VMM.
Proceedings of the 12th IEEE International Conference on Computer and Information Technology, 2012

2011
QoS-Aware Automatic Service Composition: A Graph View.
J. Comput. Sci. Technol., 2011

High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

Time-Slot Energy-Efficient Scheduling Algorithm for Capacity Limited Networks.
Proceedings of the 2011 IEEE/ACM International Conference on Green Computing and Communications (GreenCom), 2011

A fast mapping method in the ISAF reconstruction algorithm.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
Covering-Based Routing Algorithms for Cyclic Content-Based P/S Overlays.
J. Comput. Sci. Technol., 2010

Two-phase graph search algorithm for QoS-aware automatic service composition.
Proceedings of the IEEE International Conference on Service-Oriented Computing and Applications, 2010

QSynth: A Tool for QoS-aware Automatic Service Composition.
Proceedings of the IEEE International Conference on Web Services, 2010

VMGuard: An Integrity Monitoring System for Management Virtual Machines.
Proceedings of the 16th IEEE International Conference on Parallel and Distributed Systems, 2010

Protein classification using family profiles.
Proceedings of the Seventh International Conference on Fuzzy Systems and Knowledge Discovery, 2010

Thread Owned Block Cache: Managing Latency in Many-Core Architecture.
Proceedings of the Euro-Par 2010 - Parallel Processing, 16th International Euro-Par Conference, Ischia, Italy, August 31, 2010

Efficient Address Mapping of Shared Cache for On-Chip Many-Core Architecture.
Proceedings of the Euro-Par 2010 - Parallel Processing, 16th International Euro-Par Conference, Ischia, Italy, August 31, 2010

TRIOB: A Trusted Virtual Computing Environment Based on Remote I/O Binding Mechanism.
Proceedings of the Cryptology and Network Security - 9th International Conference, 2010

An accurate, automatic method for markerless alignment of electron tomographic images.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Correcting Interaction Mismatches for Business Processes.
Proceedings of the 2010 IEEE International Conference on Services Computing, 2010

2009
A Self-adaptive Greedy Scheduling Scheme for a Multi-Objective Optimization on Identical Parallel Machines.
Proceedings of the Software Engineering, 2009

A framework to refine particle clusters produced by EMAN.
Bioinform., 2009

Effective Pruning Algorithm for QoS-Aware Service Composition.
Proceedings of the 2009 IEEE Conference on Commerce and Enterprise Computing, 2009

Study on Fine-Grained Synchronization in Many-Core Architecture.
Proceedings of the 10th ACIS International Conference on Software Engineering, 2009

Evaluation Method of Synchronization for Shared-Memory On-Chip Many-Core Processor.
Proceedings of the IEEE International Symposium on Parallel and Distributed Processing with Applications, 2009

Modified Simultaneous Algebraic Reconstruction Technique and its Parallelization in Cryo-electron Tomography.
Proceedings of the 15th IEEE International Conference on Parallel and Distributed Systems, 2009

An effective scheduling algorithm for Linear Makespan Minimization on Unrelated Parallel Machines.
Proceedings of the 16th International Conference on High Performance Computing, 2009

Covering-Based Routing Algorithms for Cyclic Content-Based P/S System.
Proceedings of the Frontiers in Algorithmics, Third International Workshop, 2009

A New Method for Remote Protein Classification.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

Design of New Hash Mapping Functions.
Proceedings of the Ninth IEEE International Conference on Computer and Information Technology, 2009

2008
ASCSS: An Automatic Service Composition Approach Based on Service Similarity.
Proceedings of the Fourth International Conference on Semantics, Knowledge and Grid, 2008

An improvement method based on OrthoMCL by adding the domain information.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007
Improved structural modeling based on conserved domain clusters and structure-anchored alignments.
Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), 2007

Using Domain-Based Structural Ensemble to Improve Structure Modeling.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
A method to integrate, assess and characterize the protein-protein interactions.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

A profile-based protein sequence alignment algorithm for a domain clustering database.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

2005
The Construction of Structural Templates for the Modeling of conserved protein Domains.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005

2004
Parallel divide and conquer bio-sequence comparison based on smith-waterman algorithm.
Sci. China Ser. F Inf. Sci., 2004

The embedding of rings and meshes into RP(k) networks.
Sci. China Ser. F Inf. Sci., 2004

2001
Universal-stability results and performance bounds for greedy contention-resolution protocols.
J. ACM, 2001

A practical interconnection network RP(k) and its routing algorithms.
Sci. China Ser. F Inf. Sci., 2001

1996
Universal Stability Results for Greedy Contention-Resolution Protocols.
Proceedings of the 37th Annual Symposium on Foundations of Computer Science, 1996


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