Zhihao Yang

Orcid: 0000-0002-1902-7671

According to our database1, Zhihao Yang authored at least 223 papers between 2005 and 2025.

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Bibliography

2025
Continual learning with high-order experience replay for dynamic network embedding.
Pattern Recognit., 2025

TR-Net: Token Relation Inspired Table Filling Network for Joint Entity and Relation Extraction.
Comput. Speech Lang., 2025

2024
Auto-Correlation and Channel Attention Enhanced Deep Graph Convolution Networks for Gait Phase Prediction Based on Multi-IMU System.
Int. J. Comput. Intell. Syst., December, 2024

Predicting Protein Functions Based on Heterogeneous Graph Attention Technique.
IEEE J. Biomed. Health Informatics, April, 2024

A dynamic spatiotemporal model for fall warning and protection.
Medical Biol. Eng. Comput., April, 2024

A plug-and-play adapter for consistency identification in task-oriented dialogue systems.
Inf. Process. Manag., March, 2024

Dual Regression-Enhanced Gaze Target Detection in the Wild.
IEEE Trans. Cybern., January, 2024

Let Topic Flow: A Unified Topic-Guided Segment-Wise Dialogue Summarization Framework.
IEEE ACM Trans. Audio Speech Lang. Process., 2024

KMc-ToD: Structure knowledge enhanced multi-copy network for task-oriented dialogue system.
Knowl. Based Syst., 2024

Location-enhanced syntactic knowledge for biomedical relation extraction.
J. Biomed. Informatics, 2024

SSGU-CD: A combined semantic and structural information graph U-shaped network for document-level Chemical-Disease interaction extraction.
J. Biomed. Informatics, 2024

Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks.
J. Am. Medical Informatics Assoc., 2024

Does Digital Transformation Affect the Financialization of Real Sector Firms?
Proceedings of the Metaverse - METAVERSE 2024, 2024

MIT: Multi-cue Injected Transformer for Two-Stage HOI Detection.
Proceedings of the Pattern Recognition and Computer Vision - 7th Chinese Conference, 2024

EDNER: Edge Detection for Named Entity Recognition.
Proceedings of the Natural Language Processing and Chinese Computing, 2024

Peeling Back the Layers: Interpreting the Storytelling of ViT.
Proceedings of the 32nd ACM International Conference on Multimedia, MM 2024, Melbourne, VIC, Australia, 28 October 2024, 2024

The Orthogonality of Weight Vectors: The Key Characteristics of Normalization and Residual Connections.
Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence, 2024

Xpert: Empowering Incident Management with Query Recommendations via Large Language Models.
Proceedings of the 46th IEEE/ACM International Conference on Software Engineering, 2024

Exploring the Capability of Multimodal LLMs with Yonkoma Manga: The YManga Dataset and Its Challenging Tasks.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

Breaking the Boundaries: A Unified Framework for Chinese Named Entity Recognition Across Text and Speech.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

"Barking up the Right Tree", a GAN-Based Pun Generation Model through Semantic Pruning.
Proceedings of the 2024 Joint International Conference on Computational Linguistics, 2024

What a Surprise! Computing Rewritten Modules Can Be as Efficient as Computing Subset Modules.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue.
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
Hyperbolic hierarchical knowledge graph embeddings for biological entities.
J. Biomed. Informatics, November, 2023

Gait Recognition Based on Minirocket with Inertial Measurement Units.
Int. J. Humanoid Robotics, October, 2023

RDKG-115: Assisting drug repurposing and discovery for rare diseases by trimodal knowledge graph embedding.
Comput. Biol. Medicine, September, 2023

A Self-Supervised Framework for Learning Biological Entities Representation by Fusing Class Information.
IEEE J. Biomed. Health Informatics, August, 2023

Local discriminative graph convolutional networks for text classification.
Multim. Syst., August, 2023

Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning.
Bioinform., August, 2023

ADPG: Biomedical entity recognition based on Automatic Dependency Parsing Graph.
J. Biomed. Informatics, April, 2023

Improving Protein Function Prediction by Adaptively Fusing Information From Protein Sequences and Biomedical Literature.
IEEE J. Biomed. Health Informatics, February, 2023

Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Development of Hybrid-Actuator Robotic Exoskeleton Based on Gesture Signal Recognition Algorithm for the Rehabilitation of Dysfunctional Finger.
IEEE Access, 2023

Simple Approach for Aspect Sentiment Triplet Extraction Using Span-Based Segment Tagging and Dual Extractors.
Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2023

Research on Segmentation Algorithm for Vertebral CT Images Based on Spatial Configuration-Net and U-Net Deep Learning Model.
Proceedings of the 2023 4th International Symposium on Artificial Intelligence for Medicine Science, 2023

ODEE: A One-Stage Object Detection Framework for Overlapping and Nested Event Extraction.
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

Improving Stability of Gaze Target Detection in Videos.
Proceedings of the 49th Annual Conference of the IEEE Industrial Electronics Society, 2023

Uplink Precoding Design for Coherent Paired Users in Multi-cell MIMO Systems.
Proceedings of the IEEE Globecom Workshops 2023, 2023

TrajTrace: Tracing Moving Objects over Social Media.
Proceedings of the Database Systems for Advanced Applications, 2023

BokehOrNot: Transforming Bokeh Effect with Image Transformer and Lens Metadata Embedding.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023


Biomedical Named Entity Recognition Through Deep Reinforcement Learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

OD-RTE: A One-Stage Object Detection Framework for Relational Triple Extraction.
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

2022
Two-stage robust optimization strategy for spatially-temporally correlated data centers with data-driven uncertainty sets.
Dataset, December, 2022

The DLMP-based Equilibrium Optimization Strategy for Data Center Park with Spatial-Temporal Demand-side Resources.
Dataset, October, 2022

A Semantic Network Encoder for Associated Fact Prediction.
IEEE Trans. Knowl. Data Eng., 2022

EPIHC: Improving Enhancer-Promoter Interaction Prediction by Using Hybrid Features and Communicative Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

An Adaptive Alternating Magnetic Interference Suppression (AAIS) Algorithm for Geomagnetic Vector Measurement.
Sensors, 2022

Global-locality preserving projection for word embedding.
Int. J. Mach. Learn. Cybern., 2022

A multi-view network for real-time emotion recognition in conversations.
Knowl. Based Syst., 2022

MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework.
J. Biomed. Informatics, 2022

Dependency multi-weight-view graphs for event detection with label co-occurrence.
Inf. Sci., 2022

Manifold biomedical text sentence embedding.
Neurocomputing, 2022

Refining electronic medical records representation in manifold subspace.
BMC Bioinform., 2022

Multimodal reasoning based on knowledge graph embedding for specific diseases.
Bioinform., 2022

Optimal Reactive Power Dispatch of Distribution Network Considering Voltage Security.
Proceedings of the IEEE Symposium Series on Computational Intelligence, 2022

Dialogue Topic Extraction as Sentence Sequence Labeling.
Proceedings of the Natural Language Processing and Chinese Computing, 2022

Versatile Multi-stage Graph Neural Network for Circuit Representation.
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Distribution Network Congestion Management with Internet Data Centers Using Bi-level Programming.
Proceedings of the IEEE PES Innovative Smart Grid Technologies - Asia, 2022

Unsupervised Classification of Polarimetric SAR Images Based on Scattering Mechanism.
Proceedings of the IEEE International Geoscience and Remote Sensing Symposium, 2022

ND-NER: A Named Entity Recognition Dataset for OSINT Towards the National Defense Domain.
Proceedings of the Neural Information Processing - 29th International Conference, 2022

A Coarse-to-Fine Human Visual Focus Estimation for ASD Toddlers in Early Screening.
Proceedings of the Intelligent Robotics and Applications - 15th International Conference, 2022

Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition.
Proceedings of the 29th International Conference on Computational Linguistics, 2022

Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Location-Guided Token Pair Tagger for Joint Biomedical Entity and Relation Extraction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Patient Condition Change Network for Safe Medication Recommendation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Lexicon Knowledge Boosted Interaction Graph Network for Adverse Drug Reaction Recognition From Social Media.
IEEE J. Biomed. Health Informatics, 2021

Sentence representation with manifold learning for biomedical texts.
Knowl. Based Syst., 2021

Biomedical named entity recognition using BERT in the machine reading comprehension framework.
J. Biomed. Informatics, 2021

Improving biomedical word representation with locally linear embedding.
Neurocomputing, 2021

Identifying adverse drug reaction entities from social media with adversarial transfer learning model.
Neurocomputing, 2021

Deep learning with language models improves named entity recognition for PharmaCoNER.
BMC Bioinform., 2021

Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks.
Appl. Soft Comput., 2021

Adversarial transfer network with bilinear attention for the detection of adverse drug reactions from social media.
Appl. Soft Comput., 2021

ATM: Attribute-Based Privacy-Preserving Task Assignment and Incentive Mechanism for Crowdsensing.
IEEE Access, 2021

Stochastic Delay Performance Guarantee in A Terminal-Edge Collaboration System.
Proceedings of the 13th International Conference on Wireless Communications and Signal Processing, 2021

Focus on Interaction: A Novel Dynamic Graph Model for Joint Multiple Intent Detection and Slot Filling.
Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Chinese Medical Named Entity Recognition Based on Chinese Character Radical Features and Pre-trained Language Models.
Proceedings of the International Conference on Asian Language Processing, 2021

Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction.
Proceedings of the Information Retrieval - 27th China Conference, 2021

High electric conducting 1D nanomaterial/polymer composite fibers for wearable biomedical sensing system.
Proceedings of the BIC 2021: International Conference on Bioinformatics and Intelligent Computing, 2021

TL-BERT: A Novel Biomedical Relation Extraction Approach.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

SGAT: a Self-supervised Graph Attention Network for Biomedical Relation Extraction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Self-Supervised Learning with Heterogeneous Graph Neural Network for COVID-19 Drug Recommendation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
KGHC: a knowledge graph for hepatocellular carcinoma.
BMC Medical Informatics Decis. Mak., 2020

Attention guided capsule networks for chemical-protein interaction extraction.
J. Biomed. Informatics, 2020

A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature.
J. Biomed. Informatics, 2020

Exploiting adversarial transfer learning for adverse drug reaction detection from texts.
J. Biomed. Informatics, 2020

FBSN: A hybrid fine-grained neural network for biomedical event trigger identification.
Neurocomputing, 2020

Sensitivity-controlled event trigger identification in multi-level biomedical context.
Int. J. Data Min. Bioinform., 2020

Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction.
BMC Bioinform., 2020

Biomedical document triage using a hierarchical attention-based capsule network.
BMC Bioinform., 2020

Exploiting sequence labeling framework to extract document-level relations from biomedical texts.
BMC Bioinform., 2020

Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge.
Bioinform., 2020

Pricing Strategy of Multi-Energy Provider Considering Integrated Demand Response.
IEEE Access, 2020

Interactive Self-Attentive Siamese Network for Biomedical Sentence Similarity.
IEEE Access, 2020

Risk Assessment of Cyber Attacks on Power Grids Considering the Characteristics of Attack Behaviors.
IEEE Access, 2020

Power Decoupling Control Strategy of 35 kV Cascaded H-Bridge Energy Storage System.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2020

Joint Entity and Relation Extraction for Legal Documents with Legal Feature Enhancement.
Proceedings of the 28th International Conference on Computational Linguistics, 2020

Gated iterative capsule network for adverse drug reaction detection from social media.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Extracting biomedical relations via a multi-head attention based graph convolutional network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

A Graph-boosted Framework for Adverse Drug Event Detection on Twitter.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Drug Repositioning for SARS-CoV-2 Based on Graph Neural Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Cross2Self-attentive Bidirectional Recurrent Neural Network with BERT for Biomedical Semantic Text Similarity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks.
Neural Comput. Appl., 2019

Integrating shortest dependency path and sentence sequence into a deep learning framework for relation extraction in clinical text.
BMC Medical Informatics Decis. Mak., 2019

Intelligent multi-document summarization for biomedical literature by word embeddings and graph-based ranking.
J. Intell. Fuzzy Syst., 2019

Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network.
J. Biomed. Informatics, 2019

Neural network-based approaches for biomedical relation classification: A review.
J. Biomed. Informatics, 2019

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method.
Int. J. Data Min. Bioinform., 2019

KeSACNN: a protein-protein interaction article classification approach based on deep neural network.
Int. J. Data Min. Bioinform., 2019

Adverse drug reaction detection via a multihop self-attention mechanism.
BMC Bioinform., 2019

A supervised term ranking model for diversity enhanced biomedical information retrieval.
BMC Bioinform., 2019

Chemical-protein interaction extraction via contextualized word representations and multihead attention.
Database J. Biol. Databases Curation, 2019

Biomedical event trigger detection with convolutional highway neural network and extreme learning machine.
Appl. Soft Comput., 2019

Detection of protein complexes from multiple protein interaction networks using graph embedding.
Artif. Intell. Medicine, 2019

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature.
IEEE Access, 2019

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures.
IEEE Access, 2019

DUTIR at TREC 2019: Precision Medicine Track.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering.
Proceedings of the Natural Language Processing and Chinese Computing, 2019

Residual Connected Enhanced Sequential Inference Model for Natural Language Inference.
Proceedings of the 14th IEEE International Conference on Intelligent Systems and Knowledge Engineering, 2019

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

Disease Gene Prediction Based on Heterogeneous Probabilistic Hypergraph Ranking.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Exploring Answer Information for Question Classification in Community Question Answering.
J. Multiple Valued Log. Soft Comput., 2018

A neural network approach to chemical and gene/protein entity recognition in patents.
J. Cheminformatics, 2018

An effective neural model extracting document level chemical-induced disease relations from biomedical literature.
J. Biomed. Informatics, 2018

A hybrid model based on neural networks for biomedical relation extraction.
J. Biomed. Informatics, 2018

SemaTyP: a knowledge graph based literature mining method for drug discovery.
BMC Bioinform., 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.
BMC Bioinform., 2018

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.
Bioinform., 2018

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.
Bioinform., 2018

Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach.
Database J. Biol. Databases Curation, 2018

WECA:A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition.
Proceedings of the Evaluation Tasks at the China Conference on Knowledge Graph and Semantic Computing (CCKS 2018), 2018

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein Complexes Detection Based on Global Network Representation Learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

PC-SENE: A node embedding based method for protein complex detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A multi-task learning based approach to biomedical entity relation extraction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
A multiple distributed representation method based on neural network for biomedical event extraction.
BMC Medical Informatics Decis. Mak., 2017

A parallel C4.5 decision tree algorithm based on MapReduce.
Concurr. Comput. Pract. Exp., 2017

DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks.
BMC Syst. Biol., 2017

An attention-based effective neural model for drug-drug interactions extraction.
BMC Bioinform., 2017

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

A hybrid protein-protein interaction triple extraction method for biomedical literature.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
A graph kernel based on context vectors for extracting drug-drug interactions.
J. Biomed. Informatics, 2016

A protein-protein interaction extraction approach based on deep neural network.
Int. J. Data Min. Bioinform., 2016

Biomedical event trigger detection based on convolutional neural network.
Int. J. Data Min. Bioinform., 2016

A method for predicting protein complex in dynamic PPI networks.
BMC Bioinform., 2016

Construction of dynamic probabilistic protein interaction networks for protein complex identification.
BMC Bioinform., 2016

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.
Bioinform., 2016

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models.
Proceedings of the Social Media Processing - 5th National Conference, 2016

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks.
Proceedings of the Natural Language Understanding and Intelligent Applications, 2016

Stability analysis of a hybrid multi-infeed HVDC system connected between two offshore wind farms and two power grids.
Proceedings of the 2016 IEEE Industry Applications Society Annual Meeting, 2016

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

ML-CNN: A novel deep learning based disease named entity recognition architecture.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Biomedical event extraction based on distributed representation and deep learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Protein complex detection in PPI networks based on data integration and supervised learning method.
BMC Bioinform., December, 2015

Integrating experimental and literature protein-protein interaction data for protein complex prediction.
BMC Genom., 2015

Predicting User Relationship from Scratch.
Proceedings of the Social Media Processing - 4th National Conference, 2015

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering.
Proceedings of the Ninth International Conference on Frontier of Computer Science and Technology, 2015

Deep neural network based protein-protein interaction extraction from biomedical literature.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Discover potential adverse drug reactions using the skip-gram model.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Learning to rank for biomedical information retrieval.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Biomedical event trigger detection by dependency-based word embedding.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Predicting protein complex in protein interaction network - a supervised learning based method.
BMC Syst. Biol., 2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.
BMC Bioinform., 2014

Analysis of measured power-quality results of a PV system connected to Peng-Hu power system.
Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Evaluation of measured power-quality results of a wind farm connected to Taiwan power system.
Proceedings of the 2014 IEEE Industry Application Society Annual Meeting, 2014

Data integration and supervised learning based protein complex detection method.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Fractal descriptor applied to the classification of HEp-2 cell patterns.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Deep graph search based disease related knowledge summarization from biomedical literature.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Exploring Useful Features for Biomedical Event Trigger Detection.
J. Multiple Valued Log. Soft Comput., 2013

Integrating multiple biomedical resources for protein complex prediction.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Predicting protein complexes in protein interaction networks: A supervised learning based method.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Enhancing the accuracy of knowledge discovery: A supervised learning method.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

PPIExtractor: A protein-protein interaction Extractor for biomédical literature.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Classifying protein complexes from candidate subgraphs using fuzzy machine learning model.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

A syntactic rule-based method for automatic pathway information extraction from biomédical literature.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Combining labeled and unlabeled data for biomédical event extraction.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Neighborhood hash graph kernel for protein-protein interaction extraction.
J. Biomed. Informatics, 2011

Combining multiple disambiguation methods for gene mention normalization.
Expert Syst. Appl., 2011

Passage retrieval based hidden knowledge discovery from biomedical literature.
Expert Syst. Appl., 2011

Multiple kernel learning in protein-protein interaction extraction from biomedical literature.
Artif. Intell. Medicine, 2011

Learning to rank using query-level regression.
Proceedings of the Proceeding of the 34th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2011

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets.
J. Biomed. Informatics, 2010

Learning an enriched representation from unlabeled data for protein-protein interaction extraction.
BMC Bioinform., 2010

Asymptotic mean square stability analysis for cellular neural networks with random delays.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2010

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Ontology integration to identify protein complex in protein interaction networks.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature.
Expert Syst. Appl., 2009

Uncertainty sampling-based active learning for protein-protein interaction extraction from biomedical literature.
Expert Syst. Appl., 2009

Incorporating rich background knowledge for gene named entity classification and recognition.
BMC Bioinform., 2009

Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

A Boosting Approach for Learning to Rank Using SVD with Partially Labeled Data.
Proceedings of the Information Retrieval Technology, 2009

2008
Exploiting the contextual cues for bio-entity name recognition in biomedical literature.
J. Biomed. Informatics, 2008

Exploiting the performance of dictionary-based bio-entity name recognition in biomedical literature.
Comput. Biol. Chem., 2008

DUTIR at TREC 2008 Relevance Feedback Track.
Proceedings of The Seventeenth Text REtrieval Conference, 2008

Enhancing Biomedical Named Entity Classification Using Terabyte Unlabeled Data.
Proceedings of the Information Retrieval Technology, 2008

2007
DUTIR at TREC 2007 Genomics Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Blog Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

DUTIR at TREC 2007 Enterprise Track.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

Incorporating Dictionary Features into Conditional Random Fields for Gene/Protein Named Entity Recognition.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Two Phase Indexes Based Passage Retrieval in Biomedical Texts.
Proceedings of the Bio-Inspired Computational Intelligence and Applications, 2007

2006
DUTIR at TREC 2006: Genomics and Enterprise Tracks.
Proceedings of the Fifteenth Text REtrieval Conference, 2006

2005
TREC 2005 Genomics Track Experiments at DUTAI.
Proceedings of the Fourteenth Text REtrieval Conference, 2005


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