Zhi John Lu

According to our database, Zhi John Lu authored at least 13 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

RNACG: A Universal RNA Sequence Conditional Generation model based on Flow-Matching.

Letian Gao, Zhi John Lu

CoRR, 2024

2022

POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.

Weihao Zhao, Shang Zhang, Yumin Zhu, Xiaochen Xi, Pengfei Bao, Ziyuan Ma, Thomas H. Kapral, Shuyuan Chen, Bojan Zagrovic, Yu-Cheng T. Yang, Zhi John Lu

Nucleic Acids Res., 2022

2021

A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments.

Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang

Nat. Mach. Intell., 2021

2020

A comprehensive evaluation of connectivity methods for L1000 data.

Kequan Lin, Lu Li, Yifei Dai, Huili Wang, Shuaishuai Teng, Xilinqiqige Bao, Zhi John Lu, Dong Wang

Briefings Bioinform., 2020

2019

POSTAR2: deciphering the post-transcriptional regulatory logics.

Yumin Zhu, Gang Xu, Yu-Cheng T. Yang, Zhiyu Xu, Xinduo Chen, Binbin Shi, Daoxin Xie, Zhi John Lu, Pengyuan Wang

Nucleic Acids Res., 2019

Microarray is an efficient tool for circRNA profiling.

Shasha Li, Shuaishuai Teng, Junquan Xu, Guannan Su, Yu Zhang, Jianqing Zhao, Suwei Zhang, Haiyan Wang, Wenyan Qin, Zhi John Lu, Yong Guo, Qianyong Zhu, Dong Wang

Briefings Bioinform., 2019

2018

RISE: a database of RNA interactome from sequencing experiments.

Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang

Nucleic Acids Res., 2018

2017

POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.

Boqin Hu, Yu-Cheng T. Yang, Yiming Huang, Yumin Zhu, Zhi John Lu

Nucleic Acids Res., 2017

2016

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data.

Yang Wu, Rihao Qu, Yiming Huang, Binbin Shi, Mengrong Liu, Yang Li, Zhi John Lu

Nucleic Acids Res., 2016

Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.

Xihao Hu, Yang Wu, Zhi John Lu, Kevin Y. Yip

Briefings Bioinform., 2016

2014

Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.

Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip

Bioinform., 2014

2011

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.

Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein

PLoS Comput. Biol., 2011

2008

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics.

Zhi John Lu, David H. Mathews

Nucleic Acids Res., 2008