Zheng Yuan

According to our database, Zheng Yuan authored at least 36 papers between 2020 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A Unified Conditional Diffusion Framework for Dual Protein Targets-Based Bioactive Molecule Generation.

Lei Huang, Zheng Yuan, Huihui Yan, Rong Sheng, Linjing Liu, Fuzhou Wang, Weidun Xie, Nanjun Chen, Fei Huang, Songfang Huang, Ka-Chun Wong, Yaoyun Zhang

IEEE Trans. Artif. Intell., September, 2024

Routing to the Expert: Efficient Reward-guided Ensemble of Large Language Models.

Keming Lu, Hongyi Yuan, Runji Lin, Junyang Lin, Zheng Yuan, Chang Zhou, Jingren Zhou

Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers), 2024

#InsTag: Instruction Tagging for Analyzing Supervised Fine-tuning of Large Language Models.

Keming Lu, Hongyi Yuan, Zheng Yuan, Runji Lin, Junyang Lin, Chuanqi Tan, Chang Zhou, Jingren Zhou

Proceedings of the Twelfth International Conference on Learning Representations, 2024

Speculative Contrastive Decoding.

Hongyi Yuan, Keming Lu, Fei Huang, Zheng Yuan, Chang Zhou

Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics, 2024

MuggleMath: Assessing the Impact of Query and Response Augmentation on Math Reasoning.

Chengpeng Li, Zheng Yuan, Hongyi Yuan, Guanting Dong, Keming Lu, Jiancan Wu, Chuanqi Tan, Xiang Wang, Chang Zhou

Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2024

How Abilities in Large Language Models are Affected by Supervised Fine-tuning Data Composition.

Guanting Dong, Hongyi Yuan, Keming Lu, Chengpeng Li, Mingfeng Xue, Dayiheng Liu, Wei Wang, Zheng Yuan, Chang Zhou, Jingren Zhou

Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2024

2023

A machine learning method for improving liver cancer staging.

Zhengyun Zhao, Yichen Tian, Zheng Yuan, Peng Zhao, Feng Xia, Sheng Yu

J. Biomed. Informatics, January, 2023

Biomedical Question Answering: A Survey of Approaches and Challenges.

Qiao Jin, Zheng Yuan, Guangzhi Xiong, Qianlan Yu, Huaiyuan Ying, Chuanqi Tan, Mosha Chen, Songfang Huang, Xiaozhong Liu, Sheng Yu

ACM Comput. Surv., 2023

OccuQuest: Mitigating Occupational Bias for Inclusive Large Language Models.

Mingfeng Xue, Dayiheng Liu, Kexin Yang, Guanting Dong, Wenqiang Lei, Zheng Yuan, Chang Zhou, Jingren Zhou

CoRR, 2023

Query and Response Augmentation Cannot Help Out-of-domain Math Reasoning Generalization.

Chengpeng Li, Zheng Yuan, Hongyi Yuan, Guanting Dong, Keming Lu, Jiancan Wu, Chuanqi Tan, Xiang Wang, Chang Zhou

CoRR, 2023

Qwen Technical Report.

Jinze Bai, Shuai Bai, Yunfei Chu, Zeyu Cui, Kai Dang, Xiaodong Deng, Yang Fan, Wenbin Ge, Yu Han, Fei Huang, Binyuan Hui, Luo Ji, Mei Li, Junyang Lin, Runji Lin, Dayiheng Liu, Gao Liu, Chengqiang Lu, Keming Lu, Jianxin Ma, Rui Men, Xingzhang Ren, Xuancheng Ren, Chuanqi Tan, Sinan Tan, Jianhong Tu, Peng Wang, Shijie Wang, Wei Wang, Shengguang Wu, Benfeng Xu, Jin Xu, An Yang, Hao Yang, Jian Yang, Shusheng Yang, Yang Yao, Bowen Yu, Hongyi Yuan, Zheng Yuan, Jianwei Zhang, Xingxuan Zhang, Yichang Zhang, Zhenru Zhang, Chang Zhou, Jingren Zhou, Xiaohuan Zhou, Tianhang Zhu

CoRR, 2023

Scaling Relationship on Learning Mathematical Reasoning with Large Language Models.

Zheng Yuan, Hongyi Yuan, Chengpeng Li, Guanting Dong, Chuanqi Tan, Chang Zhou

CoRR, 2023

Hierarchical Pretraining for Biomedical Term Embeddings.

Bryan Cai, Sihang Zeng, Yucong Lin, Zheng Yuan, Doudou Zhou, Lu Tian

CoRR, 2023

DiffDTM: A conditional structure-free framework for bioactive molecules generation targeted for dual proteins.

Lei Huang, Zheng Yuan, Huihui Yan, Rong Sheng, Linjing Liu, Fuzhou Wang, Weidun Xie, Nanjun Chen, Fei Huang, Songfang Huang, Ka-Chun Wong, Yaoyun Zhang

CoRR, 2023

RRHF: Rank Responses to Align Language Models with Human Feedback without tears.

Zheng Yuan, Hongyi Yuan, Chuanqi Tan, Wei Wang, Songfang Huang, Fei Huang

CoRR, 2023

How well do Large Language Models perform in Arithmetic tasks?

Zheng Yuan, Hongyi Yuan, Chuanqi Tan, Wei Wang, Songfang Huang

CoRR, 2023

RAMM: Retrieval-augmented Biomedical Visual Question Answering with Multi-modal Pre-training.

Zheng Yuan, Qiao Jin, Chuanqi Tan, Zhengyun Zhao, Hongyi Yuan, Fei Huang, Songfang Huang

CoRR, 2023

Molecular Geometry-aware Transformer for accurate 3D Atomic System modeling.

Zheng Yuan, Yaoyun Zhang, Chuanqi Tan, Wei Wang, Fei Huang, Songfang Huang

CoRR, 2023

Exploring Partial Knowledge Base Inference in Biomedical Entity Linking.

Hongyi Yuan, Keming Lu, Zheng Yuan

Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

HyPe: Better Pre-trained Language Model Fine-tuning with Hidden Representation Perturbation.

Hongyi Yuan, Zheng Yuan, Chuanqi Tan, Fei Huang, Songfang Huang

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

Prompt Discriminative Language Models for Domain Adaptation.

Keming Lu, Peter Potash, Xihui Lin, Yuwen Sun, Zihan Qian, Zheng Yuan, Tristan Naumann, Tianxi Cai, Junwei Lu

Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022

CODER: Knowledge-infused cross-lingual medical term embedding for term normalization.

Zheng Yuan, Zhengyun Zhao, Haixia Sun, Jiao Li, Fei Wang, Sheng Yu

J. Biomed. Informatics, 2022

SeqDiffuSeq: Text Diffusion with Encoder-Decoder Transformers.

Hongyi Yuan, Zheng Yuan, Chuanqi Tan, Fei Huang, Songfang Huang

CoRR, 2022

BIOS: An Algorithmically Generated Biomedical Knowledge Graph.

Sheng Yu, Zheng Yuan, Jun Xia, Shengxuan Luo, Huaiyuan Ying, Sihang Zeng, Jingyi Ren, Hongyi Yuan, Zhengyun Zhao, Yucong Lin, Keming Lu, Jing Wang, Yutao Xie, Heung-Yeung Shum

CoRR, 2022

Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning.

Hongyi Yuan, Zheng Yuan, Sheng Yu

Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2022

Automatic Biomedical Term Clustering by Learning Fine-grained Term Representations.

Sihang Zeng, Zheng Yuan, Sheng Yu

Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model.

Hongyi Yuan, Zheng Yuan, Ruyi Gan, Jiaxing Zhang, Yutao Xie, Sheng Yu

Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark.

Ningyu Zhang, Mosha Chen, Zhen Bi, Xiaozhuan Liang, Lei Li, Xin Shang, Kangping Yin, Chuanqi Tan, Jian Xu, Fei Huang, Luo Si, Yuan Ni, Guotong Xie, Zhifang Sui, Baobao Chang, Hui Zong, Zheng Yuan, Linfeng Li, Jun Yan, Hongying Zan, Kunli Zhang, Buzhou Tang, Qingcai Chen

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

Fusing Heterogeneous Factors with Triaffine Mechanism for Nested Named Entity Recognition.

Zheng Yuan, Chuanqi Tan, Songfang Huang, Fei Huang

Proceedings of the Findings of the Association for Computational Linguistics: ACL 2022, 2022

Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding.

Zheng Yuan, Chuanqi Tan, Songfang Huang

Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers), 2022

2021

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark.

Ningyu Zhang, Zhen Bi, Xiaozhuan Liang, Lei Li, Xiang Chen, Shumin Deng, Luoqiu Li, Hongbin Ye, Xin Shang, Kangping Yin, Chuanqi Tan, Jian Xu, Mosha Chen, Fei Huang, Luo Si, Yuan Ni, Guotong Xie, Zhifang Sui, Baobao Chang, Hui Zong, Zheng Yuan, Linfeng Li, Jun Yan, Hongying Zan, Kunli Zhang, Huajun Chen, Buzhou Tang, Qingcai Chen

CoRR, 2021

Biomedical Question Answering: A Comprehensive Review.

Qiao Jin, Zheng Yuan, Guangzhi Xiong, Qianlan Yu, Chuanqi Tan, Mosha Chen, Songfang Huang, Xiaozhong Liu, Sheng Yu

CoRR, 2021

Alibaba DAMO Academy at TREC Clinical Trials 2021: ExploringEmbedding-based First-stage Retrieval with TrialMatcher.

Qiao Jin, Chuanqi Tan, Zhengyun Zhao, Zheng Yuan, Songfang Huang

Proceedings of the Thirtieth Text REtrieval Conference, 2021

Improving Biomedical Pretrained Language Models with Knowledge.

Zheng Yuan, Yijia Liu, Chuanqi Tan, Songfang Huang, Fei Huang

Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

2020

Unsupervised multi-granular Chinese word segmentation and term discovery via graph partition.

Zheng Yuan, Yuanhao Liu, Qiuyang Yin, Boyao Li, Xiaobin Feng, Guoming Zhang, Sheng Yu

J. Biomed. Informatics, 2020

CODER: Knowledge infused cross-lingual medical term embedding for term normalization.

Zheng Yuan, Zhengyun Zhao, Sheng Yu

CoRR, 2020