Zhang-Zhi Hu

According to our database, Zhang-Zhi Hu authored at least 28 papers between 2002 and 2011.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2011

dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation.

Jinlian Wang, Manabu Torii, Hongfang Liu, Gerald W. Hart, Zhang-Zhi Hu

BMC Bioinform., 2011

2010

Document classification for mining host pathogen protein-protein interactions.

Lanlan Yin, Guixian Xu, Manabu Torii, Zhendong Niu, José M. Maisog, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu

Artif. Intell. Medicine, 2010

Evaluating gene/protein name tagging and mapping for article retrieval.

Chong Min Lee, Manabu Torii, Zhang-Zhi Hu, Yi-Ting Tsai, Jinesh Shah, Hongfang Liu

Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

2009

Research Paper: BioTagger-GM: A Gene/Protein Name Recognition System.

Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu, Hongfang Liu

J. Am. Medical Informatics Assoc., 2009

Generating Abstract Networks Using Multi-relational Biological Data.

Paul Caravelli, Mitchell Beard, Brian Gopalan, Lisa Singh, Zhang-Zhi Hu

Proceedings of the 13th International Conference on Information Visualisation, 2009

Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site Prediction Using Enhanced Sequence Feature Encoding.

Manabu Torii, Hongfang Liu, Zhang-Zhi Hu

Proceedings of the AMIA 2009, 2009

Information Extraction of Protein Phosphorylation from Biomedical Literature.

Meenakshi Narayanaswamy, K. E. Ravikumar, Zhang-Zhi Hu, K. Vijay-Shanker, Cathy H. Wu

Proceedings of the Information Retrieval in Biomedicine, 2009

2008

Bioinformatic Databases.

Katherine G. Herbert, Junilda Spirollari, Jason Tsong-Li Wang, William H. Piel, John D. Westbrook, Winona C. Barker, Zhang-Zhi Hu, Cathy H. Wu

Proceedings of the Wiley Encyclopedia of Computer Science and Engineering, 2008

Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature.

Hongfang Liu, Manabu Torii, Guixian Xu, Zhang-Zhi Hu, Johannes Goll

Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008

Document Classification for Mining Host Pathogen Protein-Protein Interactions.

Guixian Xu, Lanlan Yin, Manabu Torii, Zhendong Niu, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology.

Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

A comparison study on algorithms of detecting long forms for short forms in biomedical text.

Manabu Torii, Zhang-Zhi Hu, Min Song, Cathy H. Wu, Hongfang Liu

BMC Bioinform., 2007

Framework for a Protein Ontology.

Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu

BMC Bioinform., 2007

Dependence network modeling for biomarker identification.

Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu

Bioinform., 2007

Mapping Gene/Protein Names in Free Text to Biomedical Databases.

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu

Proceedings of the Workshops Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

2006

Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging.

Hongfang Liu, Zhang-Zhi Hu, Manabu Torii, Cathy H. Wu, Carol Friedman

J. Am. Medical Informatics Assoc., 2006

An online literature mining tool for protein phosphorylation.

X. Yuan, Zhang-Zhi Hu, H. T. Wu, Manabu Torii, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu

Bioinform., 2006

BioThesaurus: a web-based thesaurus of protein and gene names.

Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu

Bioinform., 2006

Substring selection for biomedical document classification.

Bo Han, Zoran Obradovic, Zhang-Zhi Hu, Cathy H. Wu, Slobodan Vucetic

Bioinform., 2006

2005

DynGO: a tool for visualizing and mining of Gene Ontology and its associations.

Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu

BMC Bioinform., 2005

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Zhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu

Bioinform., 2005

Dynamically Generating a Protein Entity Dictionary Using Online Resources.

Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu

Proceedings of the ACL 2005, 2005

2004

PIRSF: family classification system at the Protein Information Resource.

Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker

Nucleic Acids Res., 2004

The PIR integrated protein databases and data retrieval system.

Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu

Data Sci. J., 2004

The iProClass integrated database for protein functional analysis.

Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker

Comput. Biol. Chem., 2004

iProLINK: an integrated protein resource for literature mining.

Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu

Comput. Biol. Chem., 2004

2003

The Protein Information Resource.

Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker

Nucleic Acids Res., 2003

2002

The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker

Nucleic Acids Res., 2002