Zachary B. Abrams

According to our database, Zachary B. Abrams authored at least 21 papers between 2015 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Document-level Clinical Entity and Relation extraction via Knowledge Base-Guided Generation.

Kriti Bhattarai, Inez Y. Oh, Zachary B. Abrams, Albert M. Lai

Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

2023

Electronic health record data quality assessment and tools: a systematic review.

Abigail E. Lewis, Nicole Gray Weiskopf, Zachary B. Abrams, Randi E. Foraker, Albert M. Lai, Philip R. O. Payne, Aditi Gupta

J. Am. Medical Informatics Assoc., September, 2023

2022

Self-explaining neural network with concept-based explanations for ICU mortality prediction.

Sayantan Kumar, Sean C. Yu, Thomas George Kannampallil, Zachary B. Abrams, Andrew P. Michelson, Philip R. O. Payne

Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021

Simulation-derived best practices for clustering clinical data.

Caitlin E. Coombes, Xin Liu, Zachary B. Abrams, Kevin R. Coombes, Guy N. Brock

J. Biomed. Informatics, 2021

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator.

Zachary B. Abrams, Dwayne G. Tally, Lin Zhang, Caitlin E. Coombes, Philip R. O. Payne, Lynne V. Abruzzo, Kevin R. Coombes

BMC Bioinform., 2021

RCytoGPS: an R package for reading and visualizing cytogenetics data.

Zachary B. Abrams, Dwayne G. Tally, Lynne V. Abruzzo, Kevin R. Coombes

Bioinform., 2021

Mercator: a pipeline for multi-method, unsupervised visualization and distance generation.

Zachary B. Abrams, Caitlin E. Coombes, Suli Li, Kevin R. Coombes

Bioinform., 2021

2020

Explaining Gene Expression Using Twenty-One MicroRNAs.

Amir Asiaee T., Zachary B. Abrams, Samantha Nakayiza, Deepa Sampath, Kevin R. Coombes

J. Comput. Biol., 2020

Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia.

Caitlin E. Coombes, Zachary B. Abrams, Suli Li, Lynne V. Abruzzo, Kevin R. Coombes

J. Am. Medical Informatics Assoc., 2020

Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning.

Caitlin E. Coombes, Zachary B. Abrams, Samantha Nakayiza, Guy N. Brock, Kevin R. Coombes

F1000Research, 2020

CytoGPS: A Web-Enabled Karyotype Analysis Tool for Cytogeneticists and Biomedical Data Scientists.

Zachary B. Abrams, Lin Zhang, Ricky Rodriguez, Lynne V. Abruzzo, Kevin R. Coombes, Philip R. P. Payne

Proceedings of the AMIA 2020, 2020

2019

A protocol to evaluate RNA sequencing normalization methods.

Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes

BMC Bioinform., 2019

Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing.

Mark R. Zucker, Lynne V. Abruzzo, Carmen D. Herling, Lynn L. Barron, Michael J. Keating, Zachary B. Abrams, Nyla A. Heerema, Kevin R. Coombes

Bioinform., 2019

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics.

Zachary B. Abrams, Lin Zhang, Lynne V. Abruzzo, Nyla A. Heerema, Suli Li, Tom Dillon, Ricky Rodriguez, Kevin R. Coombes, Philip R. O. Payne

Bioinform., 2019

2018

Thresher: determining the number of clusters while removing outliers.

Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes

BMC Bioinform., 2018

2017

Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing.

Travis S. Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2016

Session Introduction.

Kelly Regan, Zachary B. Abrams, Michael F. Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration.

Satyajeet Raje, Zachary B. Abrams, Kevin R. Coombes, Philip R. O. Payne

Proceedings of the Summit on Clinical Research Informatics, 2016

Use of Administrative Data to Predict Risk of Liver Disease.

Tasneem Motiwala, Zachary B. Abrams, Kelly Regan, Bobbie Kite, Gregg M. Gascon, Philip R. O. Payne

Proceedings of the Summit on Clinical Research Informatics, 2016

2015

Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts.

Zachary B. Abrams, Andrea L. Peabody, Nyla A. Heerema, Philip R. O. Payne

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

KaryoViz: Designing A Karyotype Visualization Platform for Clinical Decision Support.

Zachary B. Abrams, Satyajeet Raje

Proceedings of the AMIA 2015, 2015