Yuri Matsuzaki

According to our database, Yuri Matsuzaki authored at least 11 papers between 1999 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer.

Kento Aoyama, Masanori Kakuta, Yuri Matsuzaki, Takashi Ishida, Masahito Ohue, Yutaka Akiyama

Supercomput. Front. Innov., 2020

2018

MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions.

Takanori Hayashi, Yuri Matsuzaki, Keisuke Yanagisawa, Masahito Ohue, Yutaka Akiyama

BMC Bioinform., 2018

2014

MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.

Masahito Ohue, Takehiro Shimoda, Shuji Suzuki, Yuri Matsuzaki, Takashi Ishida, Yutaka Akiyama

Bioinform., 2014

2013

MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.

Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Takehiro Shimoda, Toshiyuki Sato, Takashi Ishida, Yutaka Akiyama

Source Code Biol. Medicine, 2013

The MEGADOCK project: Ultra-high-speed protein-protein interaction prediction tools on supercomputing environments.

Takehiro Shimoda, Masahito Ohue, Yuri Matsuzaki, Takayuki Fujiwara, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama

Proceedings of the ACM Conference on Bioinformatics, 2013

Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking.

Masahito Ohue, Yuri Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Improvement of the Protein-Protein Docking Prediction by Introducing a Simple Hydrophobic Interaction Model: An Application to Interaction Pathway Analysis.

Masahito Ohue, Yuri Matsuzaki, Takashi Ishida, Yutaka Akiyama

Proceedings of the Pattern Recognition in Bioinformatics, 2012

2009

<i>In silico</i> Screening of protein-protein Interactions with All-to-All Rigid docking and Clustering: an Application to Pathway Analysis.

Yuri Matsuzaki, Yusuke Matsuzaki, Toshiyuki Sato, Yutaka Akiyama

J. Bioinform. Comput. Biol., 2009

2007

Robust effects of Tsr-CheBp and CheA-CheYp affinity in bacterial chemotaxis.

Yuri Matsuzaki, Shinichi Kikuchi, Masaru Tomita

Artif. Intell. Medicine, 2007

2000

The E-CELL project: towards integrative simulation of cellular processes.

Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, Tom Shimizu, Yoichi Nakayama

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

E-CELL: software environment for whole-cell simulation.

Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Thomas Simon Shimizu, Yuri Matsuzaki, Fumihiko Miyoshi, Kanako Saito, Sakura Tanida, Katsuyuki Yugi, J. Craig Venter, Clyde A. Hutchison III

Bioinform., 1999