Yuko Tsuchiya

According to our database, Yuko Tsuchiya authored at least 6 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2023

PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.

Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii

J. Chem. Inf. Model., December, 2023

2019

Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics.

Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa

J. Chem. Inf. Model., 2019

2017

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.

Akira R. Kinjo, Gert-Jan Bekker, Hirofumi Suzuki, Yuko Tsuchiya, Takeshi Kawabata, Yasuyo Ikegawa, Haruki Nakamura

Nucleic Acids Res., 2017

2014

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies.

Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley

Bioinform., 2014

2006

PreBI: prediction of biological interfaces of proteins in crystals.

Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura

Nucleic Acids Res., 2006

2005

PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces.

Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura

Bioinform., 2005