Yuichi Shiraishi

According to our database, Yuichi Shiraishi authored at least 16 papers between 2008 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

Genomic basis for RNA alterations in cancer.

Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks

Nat., 2020

2019

A Bayesian model integration for mutation calling through data partitioning.

Takuya Moriyama, Seiya Imoto, Shuto Hayashi, Yuichi Shiraishi, Satoru Miyano, Rui Yamaguchi

Bioinform., 2019

2018

hotsub: A batch job engine for cloud services with ETL framework.

Hiromu Ochiai, Kenichi Chiba, Ai Okada, Yuichi Shiraishi

J. Open Source Softw., 2018

2017

A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity.

Heewon Park, Yuichi Shiraishi, Seiya Imoto, Satoru Miyano

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A framework for generating interactive reports for cancer genome analysis.

Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi

J. Open Source Softw., 2017

2016

OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads.

Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015

Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.

Kenichi Chiba, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Seiya Imoto, Seishi Ogawa, Satoru Miyano

Bioinform., 2015

High performance computing of a fusion gene detection pipeline on the K computer.

Satoshi Ito, Yuichi Shiraishi, Teppei Shimamura, Kenichi Chiba, Satoru Miyano

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations.

Naoto Usuyama, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano, Seiya Imoto

Bioinform., 2014

2011

Statistical approaches to combining binary classifiers for multi-class classification.

Yuichi Shiraishi, Kenji Fukumizu

Neurocomputing, 2011

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.

Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano, Masao Nagasaki

BMC Bioinform., 2011

A rank-based statistical test for measuring synergistic effects between two gene sets.

Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano

Bioinform., 2011

2010

Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations.

Shuhei Kimura, Yuichi Shiraishi, Mariko Okada

J. Bioinform. Comput. Biol., 2010

Inferring cluster-based networks from differently stimulated multiple time-course gene expression data.

Yuichi Shiraishi, Shuhei Kimura, Mariko Okada

Bioinform., 2010

2009

Inference of genetic networks using linear programming machines: Application of a priori knowledge.

Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama

Proceedings of the International Joint Conference on Neural Networks, 2009

2008

Game theoretical analysis of the simple one-vs.-all classifier.

Yuichi Shiraishi

Neurocomputing, 2008