Yu-Chiao Chiu

According to our database, Yu-Chiao Chiu authored at least 19 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Systems approach for congruence and selection of cancer models towards precision medicine.

Jian Zou, Osama Shah, Yu-Chiao Chiu, Tianzhou Ma, Jennifer M. Atkinson, Steffi Oesterreich, Adrian V. Lee, George C. Tseng

PLoS Comput. Biol., January, 2024

shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning.

Li-Ju Wang, Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang, Yidong Chen, Yu-Chiao Chiu

Patterns, 2024

Predicting drug response through tumor deconvolution by cancer cell lines.

Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen

Patterns, 2024

MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text.

Parth Patel, Yu-Chiao Chiu, Yufei Hunag, Jianqiu Zhang

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2022

Deep learning tackles single-cell analysis - a survey of deep learning for scRNA-seq analysis.

Mario Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang

Briefings Bioinform., 2022

2021

CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training.

Milad Mostavi, Yu-Chiao Chiu, Yidong Chen, Yufei Huang

BMC Bioinform., 2021

2020

Deep learning of pharmacogenomics resources: moving towards precision oncology.

Yu-Chiao Chiu, Hung-I Harry Chen, Aparna Gorthi, Milad Mostavi, Siyuan Zheng, Yufei Huang, Yidong Chen

Briefings Bioinform., 2020

2019

Convolutional neural network models for cancer type prediction based on gene expression.

Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen

CoRR, 2019

2018

Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme.

Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen

CoRR, 2018

Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen

CoRR, 2018

2017

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.

Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen

BMC Bioinform., 2017

2016

A simple gene set-based method accurately predicts the synergy of drug pairs.

Yu-Ching Hsu, Yu-Chiao Chiu, Yidong Chen, Tzu-Hung Hsiao, Eric Y. Chuang

BMC Syst. Biol., 2016

2015

Patho-finder - A fast and accurate program for pathogen identification through RNA-seq.

Chin-Ting Wu, Tzu-Hung Hsiao, Yu-Chiao Chiu, Yu-Ching Hsu, Eric Y. Chuang, Yidong Chen

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme.

Yu-Chiao Chiu, Kai-Wen Liang, Tzu-Hung Hsiao, Yidong Chen, Eric Y. Chuang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Note-Taking for 3D Curricular Contents using Markerless Augmented Reality.

Mau-Tsuen Yang, Yu-Chiao Chiu

Interact. Comput., 2014

2013

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis.

Mario Flores, Tzu-Hung Hsiao, Yu-Chiao Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen

Adv. Bioinformatics, 2013

Characterization of conditions for competing endogenous RNA regulation in GBM.

Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen

Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme.

Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013