Yonggang Shi

Proceedings of the Machine Learning in Clinical Neuroimaging - 4th International Workshop, 2021

Application of Random Simulation Algorithm in Physical Education Teaching Evaluation.

[BibT_eX]

[DOI]

Proceedings of the Cyber Security Intelligence and Analytics, 2021

2020

Corrections to "Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy".

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2020

Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2020

3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2020

Automated Deformation-Based Analysis of 3D Optical Coherence Tomography in Diabetic Retinopathy.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2020

3D Retinal Vessel Density Mapping With OCT-Angiography.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2020

Morphometric development of the human fetal cerebellum during the early second trimester.

[BibT_eX]

[DOI]

NeuroImage, 2020

Groupwise track filtering via iterative message passing and pruning.

[BibT_eX]

[DOI]

Yihao Xia

NeuroImage, 2020

A probabilistic atlas of locus coeruleus pathways to transentorhinal cortex for connectome imaging in Alzheimer's disease.

[BibT_eX]

[DOI]

NeuroImage, 2020

Unsupervised Deep Learning for Susceptibility Distortion Correction in Connectome Imaging.

[BibT_eX]

[DOI]

Yuchuan Qiao

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019

Limits to anatomical accuracy of diffusion tractography using modern approaches.

[BibT_eX]

[DOI]

Kurt G. Schilling

Vishwesh Nath

Colin B. Hansen

Prasanna Parvathaneni

Jonathan Rafael-Patino

NeuroImage, 2019

FOD-based registration for susceptibility distortion correction in brainstem connectome imaging.

[BibT_eX]

[DOI]

Yuchuan Qiao

NeuroImage, 2019

Characterization of lenticulostriate arteries with high resolution black-blood T1-weighted turbo spin echo with variable flip angles at 3 and 7 Tesla.

[BibT_eX]

[DOI]

NeuroImage, 2019

3D Surface-Based Geometric and Topological Quantification of Retinal Microvasculature in OCT-Angiography via Reeb Analysis.

[BibT_eX]

[DOI]

Jiong Zhang

Amir H. Kashani

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Topographic Filtering of Tractograms as Vector Field Flows.

[BibT_eX]

[DOI]

Xinyu Nie

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Surface-Based Tracking of U-Fibers in the Superficial White Matter.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

A Fast Fiber k-Nearest-Neighbor Algorithm with Application to Group-Wise White Matter Topography Analysis.

[BibT_eX]

[DOI]

Junyan Wang

Proceedings of the Information Processing in Medical Imaging, 2019

2018

Reconnection of Interrupted Curvilinear Structures via Cortically Inspired Completion for Ophthalmologic Images.

[BibT_eX]

[DOI]

Jiong Zhang

Erik J. Bekkers

Da Chen

Tos T. J. M. Berendschot

Bart M. ter Haar Romeny

IEEE Trans. Biomed. Eng., 2018

Modeling topographic regularity in structural brain connectivity with application to tractogram filtering.

[BibT_eX]

[DOI]

NeuroImage, 2018

A probabilistic atlas of human brainstem pathways based on connectome imaging data.

[BibT_eX]

[DOI]

NeuroImage, 2018

Topological false discovery rates for brain mapping based on signal height.

[BibT_eX]

[DOI]

NeuroImage, 2018

Tracking and validation techniques for topographically organized tractography.

[BibT_eX]

[DOI]

Dogu Baran Aydogan

NeuroImage, 2018

Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

[BibT_eX]

[DOI]

Medical Image Anal., 2018

Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features.

[BibT_eX]

[DOI]

J. Comput. Biol., 2018

GIFE: Efficient and Robust Group-Wise Isometric Fiber Embedding.

[BibT_eX]

[DOI]

Junyan Wang

Proceedings of the Connectomics in NeuroImaging - Second International Workshop, 2018

FOD-Based Registration for Susceptibility Distortion Correction in Connectome Imaging.

[BibT_eX]

[DOI]

Yuchuan Qiao

Proceedings of the Connectomics in NeuroImaging - Second International Workshop, 2018

Patch-Based Mapping of Transentorhinal Cortex with a Distributed Atlas.

[BibT_eX]

[DOI]

Yuchun Tang

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017

Preface.

[BibT_eX]

[DOI]

Comput. Medical Imaging Graph., 2017

Kernel-Regularized ICA for Computing Functional Topography from Resting-State fMRI.

[BibT_eX]

[DOI]

Junyan Wang

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

A Whole-Brain Reconstruction Approach for FOD Modeling from Multi-Shell Diffusion MRI.

[BibT_eX]

[DOI]

Junling Li

Proceedings of the Connectomics in NeuroImaging - First International Workshop, 2017

FOD Restoration for Enhanced Mapping of White Matter Lesion Connectivity.

[BibT_eX]

[DOI]

Lilyana Amezcua

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Topographic Regularity for Tract Filtering in Brain Connectivity.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2017

Cell dynamic morphology analysis by deep convolutional features.

[BibT_eX]

[DOI]

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Characterization of single cell dynamic morphology by local deformation pattern modeling.

[BibT_eX]

[DOI]

Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

2016

Transformation Invariant Control of Voxel-Wise False Discovery Rate.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2016

Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain.

[BibT_eX]

[DOI]

IEEE Signal Process. Mag., 2016

Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis.

[BibT_eX]

[DOI]

NeuroImage, 2016

基于图割和水平集的肾脏医学图像分割 (Renal Cortex Segmentation Using Graph Cuts and Level Sets).

[BibT_eX]

[DOI]

Jishuang Tan

Zhiwen Liu

计算机科学, 2016

Riemannian Metric Optimization for Connectivity-Driven Surface Mapping.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Probabilistic Tractography for Topographically Organized Connectomes.

[BibT_eX]

[DOI]

Dogu Baran Aydogan

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

2015

Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging.

[BibT_eX]

[DOI]

Giang Tran

IEEE Trans. Medical Imaging, 2015

Quaternion generic Fourier descriptor for color object recognition.

[BibT_eX]

[DOI]

Pattern Recognit., 2015

Development of the human fetal hippocampal formation during early second trimester.

[BibT_eX]

[DOI]

NeuroImage, 2015

Quantitative analysis of live lymphocytes morphology and intracellular motion in microscopic images.

[BibT_eX]

[DOI]

Yali Huang

Zhiwen Liu

Biomed. Signal Process. Control., 2015

Track Filtering via Iterative Correction of TDI Topology.

[BibT_eX]

[DOI]

Dogu Baran Aydogan

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Automated multi-atlas labeling of the fornix and its integrity in alzheimer's disease.

[BibT_eX]

[DOI]

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2015

The measurement of cell viability based on temporal bag of words for image sequences.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Image Processing, 2015

Analyzing dynamic cellular morphology in time-lapsed images enabled by cellular deformation pattern recognition.

[BibT_eX]

[DOI]

Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014

Metric Optimization for Surface Analysis in the Laplace-Beltrami Embedding Space.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2014

Fast Local Trust Region Technique for Diffusion Tensor Registration Using Exact Reorientation and Regularization.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2014

Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics.

[BibT_eX]

[DOI]

NeuroImage, 2014

Persistent Reeb Graph Matching for Fast Brain Search.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Diffusion of Fiber Orientation Distribution Functions with a Rotation-Induced Riemannian Metric.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Rotational gradient field for interpolation of fiber orientation distribution in connectivity analysis.

[BibT_eX]

[DOI]

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Multi-classification of cell deformation based on object alignment and run length statistic.

[BibT_eX]

[DOI]

Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

2013

Cortical Surface Reconstruction via Unified Reeb Analysis of Geometric and Topological Outliers in Magnetic Resonance Images.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2013

Spatial-temporal atlas of human fetal brain development during the early second trimester.

[BibT_eX]

[DOI]

NeuroImage, 2013

Adaptively Constrained Convex Optimization for Accurate Fiber Orientation Estimation with High Order Spherical Harmonics.

[BibT_eX]

[DOI]

Giang Tran

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Locally Weighted Multi-atlas Construction.

[BibT_eX]

[DOI]

Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

Voxelwise Spectral Diffusional Connectivity and Its Applications to Alzheimer's Disease and Intelligence Prediction.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Labeling white matter tracts in hardi by fusing multiple tract atlases with applications to genetics.

[BibT_eX]

[DOI]

Yan Jin

Liang Zhan

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Conformal Mapping via Metric Optimization with Application for Cortical Label Fusion.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2013

Quantitative Analysis of Lymphocytes Morphology and Motion in Intravital Microscopic Images.

[BibT_eX]

[DOI]

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

2012

Unified Geometry and Topology Correction for Cortical Surface Reconstruction with Intrinsic Reeb Analysis.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Fast Diffusion Tensor Registration with Exact Reorientation and Regularization.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases.

[BibT_eX]

[DOI]

Proceedings of the Multimodal Brain Image Analysis - Second International Workshop, 2012

Modeling Dynamic Cellular Morphology in Images.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011

Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment.

[BibT_eX]

[DOI]

NeuroImage, 2011

Conformal Metric Optimization on Surface (CMOS) for Deformation and Mapping in Laplace-Beltrami Embedding Space.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins.

[BibT_eX]

[DOI]

Proceedings of the Multimodal Brain Image Analysis, First International Workshop, 2011

K-SVD for HARDI denoising.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

3D elastic registration improves HARDI-derived fiber alignment and automated tract clustering.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

CoRPORATE: Cortical Reconstruction by Pruning Outliers with Reeb Analysis and Topology-Preserving Evolution.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2011

Automated corpus callosum extraction via Laplace-Beltrami nodal parcellation and intrinsic geodesic curvature flows on surfaces.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Computer Vision, 2011

Multi-modal diffeomorphic demons registration based on mutual information.

[BibT_eX]

[DOI]

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

2010

Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection and Boundary Deformation.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2010

Mesh-based spherical deconvolution: A flexible approach to reconstruction of non-negative fiber orientation distributions.

[BibT_eX]

[DOI]

NeuroImage, 2010

A Computational Model of Multidimensional Shape.

[BibT_eX]

[DOI]

Int. J. Comput. Vis., 2010

Automated Sulci Identification via Intrinsic Modeling of Cortical Anatomy.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

A Riemannian model of regional degeneration of the hippocampus in Alzheimer's disease.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

A Model of Volumetric Shape for the Analysis of Longitudinal Alzheimer's Disease Data.

[BibT_eX]

[DOI]

Proceedings of the Computer Vision, 2010

Metric-induced optimal embedding for intrinsic 3D shape analysis.

[BibT_eX]

[DOI]

Proceedings of the Twenty-Third IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009

Joint Sulcal Detection on Cortical Surfaces With Graphical Models and Boosted Priors.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2009

Pattern of hippocampal shape and volume differences in blind subjects.

[BibT_eX]

[DOI]

NeuroImage, 2009

Cortical Shape Analysis in the Laplace-Beltrami Feature Space.

[BibT_eX]

[DOI]

Ivo D. Dinov

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Wavelet-Based Representation of Biological Shapes.

[BibT_eX]

[DOI]

Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Mesh-Based Spherical Deconvolution for Physically Valid Fiber Orientation Reconstruction from Diffusion-Weighted MRI.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Mapping Hippocampal Atrophy with a Multi-Scale Model of Shape.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Laplace-Beltrami Nodal Counts: A New Signature for 3D Shape Analysis.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2009

A Method of Quantitative Analysis for Dynamic Cellular Morphological Change.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008

Hamilton-Jacobi Skeleton on Cortical Surfaces.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2008

A Real-Time Algorithm for the Approximation of Level-Set-Based Curve Evolution.

[BibT_eX]

[DOI]

IEEE Trans. Image Process., 2008

Harmonic Surface Mapping with Laplace-Beltrami Eigenmaps.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Models of Normal Variation and Local Contrasts in Hippocampal Anatomy.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons.

[BibT_eX]

[DOI]

Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2008

2007

Direct mapping of hippocampal surfaces with intrinsic shape context.

[BibT_eX]

[DOI]

Paul M. Thompson

NeuroImage, 2007

Direct cortical mapping via solving partial differential equations on implicit surfaces.

[BibT_eX]

[DOI]

Medical Image Anal., 2007

Hamilton-Jacobi Skeletons on Cortical Surfaces with Applications in Characterizing the Gyrification Pattern Inwilliams Syndrome.

[BibT_eX]

[DOI]

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Joint Sulci Detection Using Graphical Models and Boosted Priors.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2007

2005

A Fast Level Set Method Without Solving PDEs.

[BibT_eX]

[DOI]

Proceedings of the 2005 IEEE International Conference on Acoustics, 2005

Real-Time Tracking Using Level Sets.

[BibT_eX]

[DOI]

Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), 2005

Applying Prior Knowledge in the Segmentation of 3D Complex Anatomic Structures.

[BibT_eX]

[DOI]

Hong Shen

Zhigang Peng

Proceedings of the Computer Vision for Biomedical Image Applications, 2005

2004

Multiple motion and occlusion segmentation with a multiphase level set method.

[BibT_eX]

[DOI]

Janusz Konrad

Proceedings of the Visual Communications and Image Processing 2004, 2004

Differentiable Minimin Shape Distance For Incorporating Topological Priors in Biomedical Imaging.

[BibT_eX]

[DOI]

Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Level Set Methods for Dynamic Tomography.

[BibT_eX]

[DOI]

Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Shape reconstruction from unorganized points with a data-driven level set method.

[BibT_eX]

[DOI]

Proceedings of the 2004 IEEE International Conference on Acoustics, 2004

Performance guarantees in sensor networks.

[BibT_eX]

[DOI]

Venkatesh Saligrama

Proceedings of the 2004 IEEE International Conference on Acoustics, 2004

2003

Curve evolution methods for dynamic tomography with unknown dynamic models.

[BibT_eX]

[DOI]

David A. Castañón

Proceedings of the Medical Imaging 2003: Image Processing, 2003

Tomographic reconstruction of dynamic objects.

[BibT_eX]

[DOI]

Proceedings of the Computational Imaging, Santa Clara, 2003

2002

Dynamic tomography using curve evolution with spatial-temporal regularization.

[BibT_eX]

[DOI]

David A. Castañón

Proceedings of the 2002 International Conference on Image Processing, 2002

Dynamic tomography with curve evolution methods.

[BibT_eX]

[DOI]