Yong Zhang

According to our database, Yong Zhang authored at least 21 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

MechanoBase: a comprehensive database for the mechanics of tissues and cells.

Yanhong Xiong, Shiyu Li, Yuxuan Zhang, Qianqian Chen, Mengtan Xing, Yong Zhang, Qi Wang

Database J. Biol. Databases Curation, January, 2024

2021

GLEANER: a web server for GermLine cycle Expression ANalysis and Epigenetic Roadmap visualization.

Shiyang Zeng, Yuwei Hua, Yong Zhang, Guifen Liu, Chengchen Zhao

BMC Bioinform., 2021

NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes.

Xiaolan Chen, Hui Yang, Guifen Liu, Yong Zhang

BMC Bioinform., 2021

CStreet: a computed Cell State trajectory inference method for time-series single-cell RNA sequencing data.

Chengchen Zhao, Wenchao Xiu, Yuwei Hua, Naiqian Zhang, Yong Zhang

Bioinform., 2021

2020

Design and implementation of intelligent traffic and big data mining system based on internet of things.

Weiguang Li, Juan Zhu, Yong Zhang, Shuyan Zhang

J. Intell. Fuzzy Syst., 2020

2017

CSTEA: a webserver for the Cell State Transition Expression Atlas.

Guanghui Zhu, Hui Yang, Xiao Chen, Jun Wu, Yong Zhang, Xing-Ming Zhao

Nucleic Acids Res., 2017

2016

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long

BMC Bioinform., 2016

Dr.seq: a quality control and analysis pipeline for droplet sequencing.

Xiao Huo, Sheng'en Hu, Chengchen Zhao, Yong Zhang

Bioinform., 2016

2014

CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.

Qixuan Wang, Jinyan Huang, Hanfei Sun, Jing Liu, Juan Wang, Qian Wang, Qian Qin, Shenglin Mei, Chengchen Zhao, Xiaoqin Yang, Xiaole Shirley Liu, Yong Zhang

Nucleic Acids Res., 2014

2013

Computational methodology for ChIP-seq analysis.

Hyunjin Shin, Tao Liu, Xikun Duan, Yong Zhang, Xiaole Shirley Liu

Quant. Biol., 2013

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Hanfei Sun, Bo Qin, Tao Liu, Qixuan Wang, Jing Liu, Juan Wang, Xueqiu Lin, Yulin Yang, Len Taing, Prakash K. Rao, Myles Brown, Yong Zhang, Henry Long, Xiaole Shirley Liu

Bioinform., 2013

BSeQC: quality control of bisulfite sequencing experiments.

Xueqiu Lin, Deqiang Sun, Benjamin Rodriguez, Qian Zhao, Hanfei Sun, Yong Zhang, Wei Li

Bioinform., 2013

2012

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.

Bo Qin, Meng Zhou, Ying Ge, Len Taing, Tao Liu, Qian Wang, Su Wang, Junsheng Chen, Lingling Shen, Xikun Duan, Sheng'en Hu, Wei Li, Henry Long, Yong Zhang, Xiaole Shirley Liu

Bioinform., 2012

DiNuP: a systematic approach to identify regions of differential nucleosome positioning.

Kai Fu, Qianzi Tang, Jianxing Feng, Xiaole Shirley Liu, Yong Zhang

Bioinform., 2012

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang

Bioinform., 2012

2011

CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.

Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu

Nucleic Acids Res., 2011

2006

Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors.

Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen

PLoS Comput. Biol., 2006

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.

Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2006

Phylophenetic properties of metabolic pathway topologies as revealed by global analysis.

Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen

BMC Bioinform., 2006

2005

NONCODE: an integrated knowledge database of non-coding RNAs.

Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2005

2004

Conservation analysis of small RNA genes in Escherichia coli.

Yong Zhang, Zhihua Zhang, Lunjiang Ling, Baochen Shi, Runsheng Chen

Bioinform., 2004