Yong Wang

Orcid: 0000-0003-0695-5273

Affiliations:
  • Chinese Academy of Sciences, Academy of Mathematics and Systems Science, Institute of Applied Mathematics, Beijing, China


According to our database1, Yong Wang authored at least 58 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2024
SpecLoop predicts cell type-specific chromatin loop via transcription factor cooperation.
Comput. Biol. Medicine, 2024

Predicting RNA polymerase II transcriptional elongation pausing and associated histone code.
Briefings Bioinform., 2024

2023
CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network.
Genom. Proteom. Bioinform., June, 2023

2022
Networked Knowledge and Complex Networks: An Engineering View.
IEEE CAA J. Autom. Sinica, 2022

Annotating regulatory elements by heterogeneous network embedding.
Bioinform., 2022

2021
Hydrodynamic Limit of the Boltzmann Equation to the Planar Rarefaction Wave in Three Dimensional Space.
SIAM J. Math. Anal., 2021

MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting.
Briefings Bioinform., 2021

2020
ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor.
Quant. Biol., 2020

scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization.
Bioinform., 2020

2019
A Semisupervised Classification Approach for Multidomain Networks With Domain Selection.
IEEE Trans. Neural Networks Learn. Syst., 2019

Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs.
PLoS Comput. Biol., 2019

Systems biology intertwines with single cell and AI.
BMC Bioinform., 2019

2018
Integrating data- and model-driven strategies in systems biology.
BMC Syst. Biol., 2018

2017
Understanding biological systems through the lens of data.
BMC Syst. Biol., 2017

Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations.
BMC Syst. Biol., 2017

2016
Computational probing protein-protein interactions targeting small molecules.
Bioinform., 2016

2015
Potts model based on a Markov process computation solves the community structure problem effectively.
CoRR, 2015

NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data.
Bioinform., 2015

2013
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.
BMC Syst. Biol., 2013

Computational systems biology in the big data era.
BMC Syst. Biol., 2013

Network predicting drug's anatomical therapeutic chemical code.
Bioinform., 2013

2012
A combinatorial model and algorithm for globally searching community structure in complex networks.
J. Comb. Optim., 2012

Modelling biological systems from molecules to dynamical networks.
BMC Syst. Biol., 2012

Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
BMC Syst. Biol., 2012

A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol., 2012

A unified computational model for revealing and predicting subtle subtypes of cancers.
BMC Bioinform., 2012

Identifying mutated core modules in glioblastoma by integrative network analysis.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A new method to identify repositioned drugs for prostate cancer.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011
Kernel-based data fusion improves the drug-protein interaction prediction.
Comput. Biol. Chem., 2011

Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC Syst. Biol., 2011

Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.
BMC Syst. Biol., 2011

Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation.
BMC Bioinform., 2011

2010
Optimization meets systems biology.
BMC Syst. Biol., 2010

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Syst. Biol., 2010

Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform., 2010

2009
Evaluating Protein Similarity from Coarse Structures.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Comput. Biol., 2009

Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
Proceedings of the IEEE International Conference on Systems, 2009

2008
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing, 2008

Protein cavity clustering based on community structure of pocket similarity network.
Int. J. Bioinform. Res. Appl., 2008

Gene function prediction using labeled and unlabeled data.
BMC Bioinform., 2008

2007
Supervised classification of protein structures based on convex hull representation.
Int. J. Bioinform. Res. Appl., 2007

Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC Bioinform., 2007

Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinform., 2007

Inferring transcriptional regulatory networks from high-throughput data.
Bioinform., 2007

Alignment of molecular networks by integer quadratic programming.
Bioinform., 2007

Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

A novel approach based on the combination image of fraction image and normalized mnf image to urban land use/cover mapping.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2007

2006
Inferring gene regulatory networks from multiple microarray datasets.
Bioinform., 2006

Protein Structure Comparison Based on a Measure of Information Discrepancy.
Proceedings of the Theory and Applications of Models of Computation, 2006

Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
Proceedings of the Theory and Applications of Models of Computation, 2006

Supervised Inference of Gene Regulatory Networks by Linear Programming.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

Alignment of Protein Interaction Networks by Integer Quadratic Programming.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.
J. Bioinform. Comput. Biol., 2005

A WebGIS-based system model of vehicle monitoring central platform.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Monitoring the biophysical composition changes of urban environments using normalized spectral mixture analysis.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

A comparison of university of Maryland 1km land cover dataset and a land cover dataset in China.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005


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