Yogesh Rathi

Orcid: 0000-0002-9946-2314

According to our database1, Yogesh Rathi authored at least 132 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
DDParcel: Deep Learning Anatomical Brain Parcellation From Diffusion MRI.
IEEE Trans. Medical Imaging, March, 2024

Neural orientation distribution fields for estimation and uncertainty quantification in diffusion MRI.
Medical Image Anal., 2024

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance.
Medical Image Anal., 2024

TractShapeNet: Efficient Multi-Shape Learning with 3D Tractography Point Clouds.
CoRR, 2024

The shape of the brain's connections is predictive of cognitive performance: an explainable machine learning study.
CoRR, 2024

EVENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI.
CoRR, 2024

White Matter Geometry-Guided Score-Based Diffusion Model for Tissue Microstructure Imputation in Tractography Imaging.
CoRR, 2024

Deep multimodal saliency parcellation of cerebellar pathways: linking microstructure and individual function through explainable multitask learning.
CoRR, 2024

TractGraphFormer: Anatomically Informed Hybrid Graph CNN-Transformer Network for Classification from Diffusion MRI Tractography.
CoRR, 2024

Cross-domain Fiber Cluster Shape Analysis for Language Performance Cognitive Score Prediction.
CoRR, 2024

SlicerTMS: Real-Time Visualization of Transcranial Magnetic Stimulation for Mental Health Treatment.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Estimating Neural Orientation Distribution Fields on High Resolution Diffusion MRI Scans.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

A Novel Deep Clustering Framework for Fine-Scale Parcellation of Amygdala Using DMRI Tractography.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023
Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation.
NeuroImage, June, 2023

Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions.
Medical Image Anal., April, 2023

Reconstructing the somatotopic organization of the corticospinal tract remains a challenge for modern tractography methods.
CoRR, 2023

SlicerTMS: Interactive Real-time Visualization of Transcranial Magnetic Stimulation using Augmented Reality and Deep Learning.
CoRR, 2023

Fiber Tract Shape Measures Inform Prediction of Non-Imaging Phenotypes.
CoRR, 2023

TractCloud: Registration-Free Tractography Parcellation with a Novel Local-Global Streamline Point Cloud Representation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

A Deep Network for Explainable Prediction of Non-imaging Phenotypes Using Anatomical Multi-view Data.
Proceedings of the Computational Diffusion MRI - 14th International Workshop, 2023

A Deep Learning Framework for Estimating Multi-Fiber PICASO Model Parameters of Tissue Microstructure Using Diffusion MRI.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Tractography-Based Parcellation of Cerebellar Dentate Nuclei via a Deep Nonnegative Matrix Factorization Clustering Method.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

In-Vivo Estimation of Axon Radii From Clinical Scanners.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

DEEPRGVP: A novel microstructure-informed supervised contrastive learning framework for automated identification of the retinogeniculate pathway using dMRI tractography.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

A Deep-Learning Framework for Estimating the Posterior Distribution of the Standard Model of Diffusion Mri.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Tractgraphcnn: Anatomically Informed Graph CNN for Classification Using Diffusion MRI Tractography.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022
How Machine Learning is Powering Neuroimaging to Improve Brain Health.
Neuroinformatics, 2022

White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project.
NeuroImage, 2022

Cross-site harmonization of multi-shell diffusion MRI measures based on rotational invariant spherical harmonics (RISH).
NeuroImage, 2022

Age Prediction Performance Varies Across Deep, Superficial, and Cerebellar White Matter Connections.
CoRR, 2022

A Novel Supervised Contrastive Regression Framework for Prediction of Neurocognitive Measures Using Multi-Site Harmonized Diffusion MRI Tractography.
CoRR, 2022

A Deep Learning Approach Using Masked Image Modeling for Reconstruction of Undersampled K-spaces.
CoRR, 2022

DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation.
CoRR, 2022

TractoFormer: A Novel Fiber-Level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

Model and Predict Age and Sex in Healthy Subjects Using Brain White Matter Features: A Deep Learning Approach.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
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NeuroImage, 2021

A review of deep learning methods for MRI reconstruction.
CoRR, 2021

Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects.
Proceedings of the 14th IEEE Pacific Visualization Symposium, 2021

2020
Joint RElaxation-Diffusion Imaging Moments to Probe Neurite Microstructure.
IEEE Trans. Medical Imaging, 2020

Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification.
NeuroImage, 2020

Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results.
NeuroImage, 2020

Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation.
Medical Image Anal., 2020

TRAKO: Efficient Transmission of Tractography Data for Visualization.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019
Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters.
NeuroImage, 2019

Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018
A Dynamic Regression Approach for Frequency-Domain Partial Coherence and Causality Analysis of Functional Brain Networks.
IEEE Trans. Medical Imaging, 2018

An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.
NeuroImage, 2018

Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.
NeuroImage, 2018

Whole brain white matter connectivity analysis using machine learning: An application to autism.
NeuroImage, 2018

Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.
NeuroImage, 2018

Harmonizing Diffusion MRI Data Across Magnetic Field Strengths.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017
Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion.
NeuroImage, 2017

Supra-Threshold Fiber Cluster Statistics for Data-Driven Whole Brain Tractography Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Dynamic Regression for Partial Correlation and Causality Analysis of Functional Brain Networks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Application of probabilistically weighted graphs to image-based diagnosis of Alzheimer's disease using diffusion MRI.
Proceedings of the Medical Imaging 2017: Computer-Aided Diagnosis, 2017

Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

2016
Corrigendum to "A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging".
NeuroImage, 2016

A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.
NeuroImage, 2016

Inter-site and inter-scanner diffusion MRI data harmonization.
NeuroImage, 2016

Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography.
Int. J. Comput. Assist. Radiol. Surg., 2016

2015
Estimating Diffusion Propagator and Its Moments Using Directional Radial Basis Functions.
IEEE Trans. Medical Imaging, 2015

Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?
Medical Image Anal., 2015

Sparse deconvolution of higher order tensor for fiber orientation distribution estimation.
Artif. Intell. Medicine, 2015

Harmonizing Diffusion MRI Data Across Multiple Sites and Scanners.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

A Compressed-Sensing Approach for Super-Resolution Reconstruction of Diffusion MRI.
Proceedings of the Information Processing in Medical Imaging, 2015

2014
Fusion of white and gray matter geometry: A framework for investigating brain development.
Medical Image Anal., 2014

Multi-shell diffusion signal recovery from sparse measurements.
Medical Image Anal., 2014

Spatially regularized reconstruction of fibre orientation distributions in the presence of isotropic diffusion.
CoRR, 2014

Resolving complex fibre architecture by means of sparse spherical deconvolution in the presence of isotropic diffusion.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

A dual spherical model for multi-shell diffusion imaging.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Maximum Entropy Estimation of Glutamate and Glutamine in MR Spectroscopic Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A generalized compressed sensing approach to high angular resolution diffusion imaging.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Preliminary Findings in Diagnostic Prediction of Schizophrenia Using Diffusion Tensor Imaging.
Proceedings of the Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, 2014

The Estimation of Free-Water Corrected Diffusion Tensors.
Proceedings of the Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, 2014

2013
Fiber feature map based landmark initialization for highly deformable DTI registration.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

On Describing Human White Matter Anatomy: The White Matter Query Language.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Combining Surface and Fiber Geometry: An Integrated Approach to Brain Morphology.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Diffusion Propagator Estimation Using Radial Basis Functions.
Proceedings of the Computational Diffusion MRI and Brain Connectivity, 2013

Diffusion Propagator Estimation from Sparse Measurements in a Tractography Framework.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Comparing Simultaneous Multi-slice Diffusion Acquisitions.
Proceedings of the Computational Diffusion MRI and Brain Connectivity, 2013

2012
Joint Modeling of Anatomical and Functional Connectivity for Population Studies.
IEEE Trans. Medical Imaging, 2012

Filtering in the Diffeomorphism Group and the Registration of Point Sets.
IEEE Trans. Image Process., 2012

Reconstruction of HARDI using compressed sensing and its application to contrast HARDI.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Multi-scale Characterization of White Matter Tract Geometry.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011
Spatially Regularized Compressed Sensing for High Angular Resolution Diffusion Imaging.
IEEE Trans. Medical Imaging, 2011

A full bi-tensor neural tractography algorithm using the unscented Kalman filter.
EURASIP J. Adv. Signal Process., 2011

Sparse Multi-Shell Diffusion Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Improving Registration Using Multi-channel Diffeomorphic Demons Combined with Certainty Maps.
Proceedings of the Multimodal Brain Image Analysis, First International Workshop, 2011

A swarm tracking approach for stochastic white matter tractography.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Compressed sensing of diffusion MRI data using spatial regularization and positivity constraints.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

White Matter Bundle Registration and Population Analysis Based on Gaussian Processes.
Proceedings of the Information Processing in Medical Imaging, 2011

2010
Filtered Multitensor Tractography.
IEEE Trans. Medical Imaging, 2010

Deform PF-MT: Particle Filter With Mode Tracker for Tracking Nonaffine Contour Deformations.
IEEE Trans. Image Process., 2010

On Approximation of Orientation Distributions by Means of Spherical Ridgelets.
IEEE Trans. Image Process., 2010

A filtered approach to neural tractography using the Watson directional function.
Medical Image Anal., 2010

Spatially regularized compressed sensing of diffusion MRI data
CoRR, 2010

Joint Generative Model for fMRI/DWI and Its Application to Population Studies.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

A Geometry-Based Particle Filtering Approach to White Matter Tractography.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Biomarkers for Identifying First-Episode Schizophrenia Patients Using Diffusion Weighted Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Fast and Accurate Reconstruction of HARDI Data Using Compressed Sensing.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Disease classification: a probabilistic approach.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Spatially regularized q-ball imaging using spherical ridgelets.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009
Directional functions for orientation distribution estimation.
Medical Image Anal., 2009

Two-Tensor Tractography Using a Constrained Filter.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Neural Tractography Using an Unscented Kalman Filter.
Proceedings of the Information Processing in Medical Imaging, 2009

2008
A Framework for Image Segmentation Using Shape Models and Kernel Space Shape Priors.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

Fast approximate curve evolution.
Proceedings of the Real-Time Image Processing 2008, San Jose, CA, USA, January 28-29, 2008, 2008

Segmenting images analytically in shape space.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Fast approximate surface evolution in arbitrary dimension.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

Label Space: A Coupled Multi-shape Representation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Label Space: A Multi-object Shape Representation.
Proceedings of the Combinatorial Image Analysis, 12th International Workshop, 2008

Orientation distribution estimation for Q-ball imaging.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2008

2007
A Generic Framework for Tracking Using Particle Filter With Dynamic Shape Prior.
IEEE Trans. Image Process., 2007

Image Segmentation Using Active Contours Driven by the Bhattacharyya Gradient Flow.
IEEE Trans. Image Process., 2007

Tracking Deforming Objects Using Particle Filtering for Geometric Active Contours.
IEEE Trans. Pattern Anal. Mach. Intell., 2007

Graph Cut Segmentation with Nonlinear Shape Priors.
Proceedings of the International Conference on Image Processing, 2007

Multi-Object Tracking Through Clutter Using Graph Cuts.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

Segmenting Images on the Tensor Manifold.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

A Graph Cut Approach to Image Segmentation in Tensor Space.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

Tracking Through Clutter Using Graph Cuts.
Proceedings of the British Machine Vision Conference 2007, 2007

2006
Filtering for Closed Curves.
PhD thesis, 2006

Particle Filtering with Dynamic Shape Priors.
Proceedings of the Image Analysis and Recognition, Third International Conference, 2006

A Shape-Based Approach to Robust Image Segmentation.
Proceedings of the Image Analysis and Recognition, Third International Conference, 2006

Particle Filters for Infinite (or Large) Dimensional State Spaces- Part 1.
Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

Comparative Analysis of Kernel Methods for Statistical Shape Learning.
Proceedings of the Computer Vision Approaches to Medical Image Analysis, 2006

Shape-Based Approach to Robust Image Segmentation using Kernel PCA.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

Time-varying Finite Dimensional Basis for Tracking Contour Deformations.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006

Tracking deformable objects with unscented Kalman filtering and geometric active contours.
Proceedings of the American Control Conference, 2006

2005
Particle Filtering for Geometric Active Contours with Application to Tracking Moving and Deforming Objects.
Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), 2005


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