Yoann Dufresne

According to our database, Yoann Dufresne authored at least 9 papers between 2015 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Compression algorithm for colored de Bruijn graphs.

Amatur Rahman, Yoann Dufresne, Paul Medvedev

Algorithms Mol. Biol., December, 2024

2022

The K-mer File Format: a standardized and compact disk representation of sets of <i>k</i>-mers.

Yoann Dufresne, Téo Lemane, Pierre Marijon, Pierre Peterlongo, Amatur Rahman, Marek Kokot, Paul Medvedev, Sebastian Deorowicz, Rayan Chikhi

Bioinform., 2022

2020

Norine: update of the nonribosomal peptide resource.

Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, Juraj Michalik, Philippe Jacques, Christophe Flahaut, Frédérique Lisacek, Valérie Leclère, Maude Pupin

Nucleic Acids Res., 2020

A Graph-Theoretic Barcode Ordering Model for Linked-Reads.

Yoann Dufresne, Chen Sun, Pierre Marijon, Dominique Lavenier, Cédric Chauve, Rayan Chikhi

Proceedings of the 20th International Workshop on Algorithms in Bioinformatics, 2020

2019

SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.

Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawlowski, Tristan Cordier

BMC Bioinform., 2019

2018

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.

Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet

Bioinform., 2018

2016

Algorithmique pour l'annotation automatique de peptides non ribosomiques. (Algorithms for automatic annotation of Non Ribosomal Peptides).

Yoann Dufresne

PhD thesis, 2016

Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing.

Areski Flissi, Yoann Dufresne, Juraj Michalik, Laurie Tonon, Stéphane Janot, Laurent Noé, Philippe Jacques, Valérie Leclère, Maude Pupin

Nucleic Acids Res., 2016

2015

Smiles2Monomers: a link between chemical and biological structures for polymers.

Yoann Dufresne, Laurent Noé, Valérie Leclère, Maude Pupin

J. Cheminformatics, 2015