Yixue Li
This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.
Known people with the same name:
Bibliography
2024
Towards interpretable imaging genomics analysis: Methodological developments and applications.
Inf. Fusion, February, 2024
PLRTE: Progressive learning for biomedical relation triplet extraction using large language models.
J. Biomed. Informatics, 2024
OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models in Medicine.
CoRR, 2024
Graph domain adaptation-based framework for gene expression enhancement and cell type identification in large-scale spatially resolved transcriptomics.
Briefings Bioinform., 2024
Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2024
2023
Land-Use Optimization Based on Ecological Security Pattern - A Case Study of Baicheng, Northeast China.
Remote. Sens., December, 2023
Multi-omics of extracellular vesicles: An integrative representation of functional mediators and perspectives on lung disease study.
Frontiers Bioinform., May, 2023
2022
Genom. Proteom. Bioinform., December, 2022
Comparative analysis of NovaSeq 6000 and MGISEQ 2000 single-cell RNA sequencing data.
Quant. Biol., 2022
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
Nucleic Acids Res., 2022
2021
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res., 2021
DysRegSig: an R package for identifying gene dysregulations and building mechanistic signatures in cancer.
Bioinform., 2021
2020
PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation.
Nucleic Acids Res., 2020
Kinase-substrate Edge Biomarkers Provide A More Accurate Prognostic Prediction in ER-negative Breast Cancer.
Genom. Proteom. Bioinform., 2020
A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor DNA.
BMC Bioinform., 2020
The accelerated aging model reveals critical mechanisms of late-onset Parkinson's disease.
BioData Min., 2020
2019
Computational prediction and functional analysis of arsenic-binding proteins in human cells.
Quant. Biol., 2019
2018
Differential networking meta-analysis of gastric cancer across Asian and American racial groups.
BMC Syst. Biol., 2018
Database J. Biol. Databases Curation, 2018
2017
Quant. Biol., 2017
Virtualisation of gene knockout experiments based on kinetic modelling: Escherichia coli as an algorithmic case.
Int. J. Comput. Biol. Drug Des., 2017
Protein coding gene CRNKL1 as a potential prognostic biomarker in esophageal adenocarcinoma.
Artif. Intell. Medicine, 2017
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis.
Artif. Intell. Medicine, 2017
2016
DNetDB: The human disease network database based on dysfunctional regulation mechanism.
BMC Syst. Biol., 2016
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes.
BMC Syst. Biol., 2016
A novel index of protein-protein interface propensity improves interface residue recognition.
BMC Syst. Biol., 2016
cisASE: a likelihood-based method for detecting putative <i>cis</i>-regulated allele-specific expression in RNA sequencing data.
Bioinform., 2016
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
Identification of Hepatocellular Carcinoma-Related Genes with a Machine Learning and Network Analysis.
J. Comput. Biol., 2015
Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases.
Comput. Math. Methods Medicine, 2015
Comparative Transcriptomes and EVO-DEVO Studies Depending on Next Generation Sequencing.
Comput. Math. Methods Medicine, 2015
BMC Bioinform., 2015
DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism.
Bioinform., 2015
Identifying novel associations between small molecules and miRNAs based on integrated molecular networks.
Bioinform., 2015
2014
Database J. Biol. Databases Curation, 2014
2013
Nucleic Acids Res., 2013
Structural Basis for the Mutation-Induced Dysfunction of Human CYP2J2: A Computational Study.
J. Chem. Inf. Model., 2013
cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.
BMC Syst. Biol., 2013
Applying software product line engineering in building web portals for supercomputing services.
Proceedings of the 28th Annual ACM Symposium on Applied Computing, 2013
2012
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
J. Chem. Inf. Model., 2012
A cross-species analysis method to analyze animal models' similarity to human's disease state.
BMC Syst. Biol., 2012
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer.
BMC Syst. Biol., 2012
An improved dimensionality reduction method for meta-transcriptome indexing based diseases classification.
BMC Syst. Biol., 2012
Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome.
BMC Syst. Biol., 2012
BMC Syst. Biol., 2012
cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
2011
Nucleic Acids Res., 2011
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations.
J. Chem. Inf. Model., 2011
Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds.
J. Bioinform. Comput. Biol., 2011
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma.
Int. J. Comput. Biol. Drug Des., 2011
An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis.
BMC Syst. Biol., 2011
iGepros: an integrated gene and protein annotation server for biological nature exploration.
BMC Bioinform., 2011
Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs.
BMC Bioinform., 2011
BMC Bioinform., 2011
BMC Bioinform., 2011
A novel network-based method for measuring the functional relationship between gene sets.
Bioinform., 2011
Active and Passive Nearest Neighbor Algorithm: A Newly-Developed Supervised Classifier.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2011
2010
Nucleic Acids Res., 2010
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.
BMC Bioinform., 2010
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
BMC Bioinform., 2010
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation.
BMC Bioinform., 2010
DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data.
Bioinform., 2010
Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2009
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.
Nucleic Acids Res., 2009
Nucleic Acids Res., 2009
J. Comput. Biol., 2009
GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction.
BMC Bioinform., 2009
BMC Bioinform., 2009
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels.
Database J. Biol. Databases Curation, 2009
Algorithms Mol. Biol., 2009
2008
Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation.
PLoS Comput. Biol., 2008
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information.
Nucleic Acids Res., 2008
AtPID: <i>Arabidopsis thaliana</i> protein interactome database - an integrative platform for plant systems biology.
Nucleic Acids Res., 2008
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor.
BMC Bioinform., 2008
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.
BMC Bioinform., 2008
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies.
BMC Bioinform., 2008
Bioinform., 2008
2007
Comput. Biol. Chem., 2007
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
BMC Bioinform., 2007
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinform., 2007
An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.
Bioinform., 2007
Proceedings of the CHINA HPC 2007, 2007
Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin.
Proceedings of the Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27, 2007
2006
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
PLoS Comput. Biol., 2006
Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
PLoS Comput. Biol., 2006
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.
PLoS Comput. Biol., 2006
J. Biomed. Informatics, 2006
Int. J. Pattern Recognit. Artif. Intell., 2006
Int. J. Pattern Recognit. Artif. Intell., 2006
Comput. Biol. Chem., 2006
BMC Bioinform., 2006
BMC Bioinform., 2006
BMC Bioinform., 2006
BMC Bioinform., 2006
Comparison of Modularization Methods in Application to Different Biological Networks.
Proceedings of the Data Mining and Bioinformatics, First International Workshop, 2006
On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic Poisson Default Processes.
Proceedings of The 1st IEEE Asia-Pacific Services Computing Conference, 2006
2005
Improving protein secondary structure prediction by using the residue conformational classes.
Pattern Recognit. Lett., 2005
Bioinform., 2005
Bioinform., 2005
2004
Comput. Biol. Chem., 2004
2003
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure.
Comput. Biol. Chem., 2003
A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins.
Comput. Biol. Chem., 2003