Yijun Ruan

According to our database, Yijun Ruan authored at least 8 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Virus Infection Induces Immune Gene Activation with CTCF-anchored Enhancers and Chromatin Interactions in Pig Genome.

Jianhua Cao, Ruimin Ren, Xiaolong Li, Xiaoqian Zhang, Yan Sun, Xiaohuan Tian, Ru Liu, Xiangdong Liu, Yijun Ruan, Guoliang Li, Shuhong Zhao

Genom. Proteom. Bioinform., 2024

2020

3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.

Michal Wlasnowolski, Michal Sadowski, Tymon Czarnota, Karolina Jodkowska, Przemyslaw Szalaj, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski

Nucleic Acids Res., 2020

pyBedGraph: a python package for fast operations on 1D genomic signal tracks.

Henry B. Zhang, Minji Kim, Jeffrey H. Chuang, Yijun Ruan

Bioinform., 2020

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

BMC Bioinform., February, 2016

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.

Asa Thibodeau, Eladio J. Márquez, Oscar Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar

PLoS Comput. Biol., 2016

3D-GNOME: an integrated web service for structural modeling of the 3D genome.

Przemyslaw Szalaj, Paul J. Michalski, Przemyslaw Wróblewski, Zhonghui Tang, Michal Kadlof, Giovanni Mazzocco, Yijun Ruan, Dariusz Plewczynski

Nucleic Acids Res., 2016

2008

A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data.

Vinsensius B. Vega, Yijun Ruan, Wing-Kin Sung

Proceedings of the Computational Science, 2008

2006

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.

Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Pramila Ariyaratne, Hong Sain Ooi, Chia-Lin Wei, Wing-Kin Sung, Yijun Ruan

BMC Bioinform., 2006