Yen-Yi Lin

According to our database, Yen-Yi Lin authored at least 7 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Phenotype prediction from single-cell RNA-seq data using attention-based neural networks.

Yuzhen Mao, Yen-Yi Lin, Nelson K. Y. Wong, Stanislav Volik, Funda Sar, Colin C. Collins, Martin Ester

Bioinform., February, 2024

2020

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.

Hossein Asghari, Yen-Yi Lin, Yang Xu, Ehsan Haghshenas, Colin C. Collins, Faraz Hach

Bioinform., 2020

2018

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp

Bioinform., 2018

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.

Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin C. Collins, Süleyman Cenk Sahinalp, Rolf Backofen

Bioinform., 2018

2017

Discovery and genotyping of novel sequence insertions in many sequenced individuals.

Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach

Bioinform., 2017

2014

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2014

2012

CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population.

Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin C. Collins, Süleyman Cenk Sahinalp

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012